Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m12f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    32   0.079
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    29   0.42 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   2.3  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   3.9  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   5.2  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   6.9  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.1  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +1

Query: 277  LIASLGIMVVAFLGCGS-ALMENV-TLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQ 450
            L++S+ I++ A   CG  ALM  +  +LY Y+G +    +  ++GA   +      SS+Q
Sbjct: 838  LVSSITIVLKA---CGEEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQ 894

Query: 451  PLIRNVIVRL 480
            P IR+++ RL
Sbjct: 895  PPIRDLLPRL 904


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 197 QRHSANTDTPNNQRTTLKQNSVYFIQ*IWDSSFPTTGPCPPAILTITKQYFVTSPVHSRS 18
           Q +  N  T N  +  L+Q S   +Q  ++   PTT P  P I  + +QY V  P    S
Sbjct: 506 QNNPVNPSTTNPFQNFLRQPSYQGMQ--FEQQQPTTIPLQPNIPVLNQQYPVMIPAMEDS 563

Query: 17  R 15
           R
Sbjct: 564 R 564


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 376 LALFVFGLIGACVVLDFSTYDSSIQ 450
           L +F+F L G+C++  F  Y S+I+
Sbjct: 72  LQIFLFSLFGSCMLFRFIKYPSTIK 96



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
 Frame = +1

Query: 52  CFVIVKMAGGQGPVVGKLESQIYCIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWM 231
           C VI        P        I+ I +    F V L LF V+V         +P     M
Sbjct: 185 CGVIAGAVNSTQPAHQLKNMVIFGILFQGLGFWVYLLLFAVNVLRFFTVGLAKPQDRPGM 244

Query: 232 RILELQKYFIGIYIMLIA--SLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG 405
            +      F G+ ++ IA  ++G     F+G  S+         G++ + +A+F++GL  
Sbjct: 245 FMFVGPPAFSGLALINIARGAMGSRPYIFVGANSSEY------LGFVSTFMAIFIWGLAA 298

Query: 406 ACVVL 420
            C  L
Sbjct: 299 WCYCL 303


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 154 VLWLFGVSVFALCLWICFEPGFNEWMRILELQK 252
           V W+ GV++ A  + +    G N+W + L+ +K
Sbjct: 274 VEWVEGVAIMAAIVIVVTVGGVNDWQKELQFKK 306


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 335 ISADPHPRNATTMMPKEAMSIM*IPMKY 252
           +   P P   TT+ P  +MS + IP KY
Sbjct: 229 VKGHPSPATVTTLPPFMSMSTIPIPCKY 256


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 245 SSRILIHSLKPGSKQIQRHSANTDTPNNQ 159
           SS+I  +  KP  + IQRH  +   P++Q
Sbjct: 121 SSKIKSNDNKPAVQSIQRHGPDVAAPSSQ 149


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 196 WICFEPGFNEWM-RILELQKYFIGIYIMLIASLGI 297
           WICF      WM   L+ +K  I  +  L + LG+
Sbjct: 160 WICFRESGKHWMVSALDAEKRAIQRFSELFSGLGL 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,160
Number of Sequences: 5004
Number of extensions: 63292
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)