Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m12f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    48   8e-08
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 37/164 (22%), Positives = 72/164 (43%)
 Frame = +1

Query: 124 IKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMV 303
           IKY LF FN V  + G+ +  L + I  +       + +E    F  I ++++ S+ I V
Sbjct: 8   IKYLLFIFNFVFAVCGLGILTLGVLIHLQ--ILGVSKQIETGLAFPSITLIVLGSI-IFV 64

Query: 304 VAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIVRLI 483
           ++F GC  A+ E+  +   +    L + +  +  A         D + + +         
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFN 124

Query: 484 NNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDS 615
               +  S++ +  +Q+ + CCG     DY   +KP+P+ C +S
Sbjct: 125 GYFLNSESKDFIDFIQKNLQCCGVHSLSDY--NDKPIPASCCNS 166


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 425 KSSTTHAPISPNTNKANCDPM*PYKSV 345
           K   +  P+ PN   AN   + PY S+
Sbjct: 647 KDGQSPFPLPPNLASANISQLDPYSSL 673


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 176 RYSHYVSGFASSPASMNG 229
           RY+  V G +  P S+NG
Sbjct: 150 RYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 176 RYSHYVSGFASSPASMNG 229
           RY+  V G +  P S+NG
Sbjct: 116 RYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 176 RYSHYVSGFASSPASMNG 229
           RY+  V G +  P S+NG
Sbjct: 26  RYNVIVKGLSGKPLSING 43


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 369  PNVTV*KCYVFHQCRPASE 313
            PN+ V    VFHQ +P ++
Sbjct: 989  PNIFVKDVLVFHQGQPTND 1007


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,878
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)