Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14m11f
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 57 2e-09
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 27 1.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 1.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.8
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 2.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 3.8
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 3.8
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 6.6
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 25 6.6
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 8.7
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 57.2 bits (132), Expect = 2e-09
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +2
Query: 371 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 538
+PT+ +W GGG+ V+++G+F+ W K I ++KS D+ ++ L G ++K+ VDG W
Sbjct: 99 VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSE-DYTVLLQLRPGTQRFKFLVDGIW 154
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 428 FTDWKTIPMVKSHGDFVTIIDLPEGEHQ 511
F+DW TIP + +G+FV D+ H+
Sbjct: 89 FSDWPTIPQLYINGEFVGGSDILASMHK 116
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 133 SIFMPFFGLVTSGIPHLIFKWL 68
++ M FG +T IPHLI+ W+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIYFWI 1513
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 130 IFMPFFGLVTSGIPHLIFKWL 68
++M FG +T+ +PH I+ W+
Sbjct: 1335 MYMLLFGSITAWLPHYIYFWI 1355
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 57 LHTYNHLKIKWGMPEVTNPKNG 122
+H KI W +P+ NPK+G
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -2
Query: 109 LVTSGIPHLIFKWL--YVCRFV 50
L+T G+ +LIF+WL Y RFV
Sbjct: 176 LLTLGLAYLIFRWLPKYFIRFV 197
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 172 WR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRF 53
W RS + +S+F+ F G+ I W Y C+F
Sbjct: 984 WHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMWSY-CKF 1022
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 402 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 310
PP S+ +T+ +TL++ ++ L + + L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 428 FTDWKTIPMVKSHGDFVTIIDL 493
F+DW T P + G+FV +D+
Sbjct: 207 FSDWPTFPQLYIKGEFVGGLDI 228
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 92 NAGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDK 205
+ G K + K ANKS D+D +P EG +F +++
Sbjct: 213 SVGGGGRKLFRKVANKSSDYDPDLCAPRTEG-SFIYEE 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,736
Number of Sequences: 5004
Number of extensions: 53733
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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