Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14m07r
(725 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 29 0.059
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 29 0.059
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.14
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.14
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.31
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 26 0.42
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.42
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.42
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 6.8
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 6.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.0
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 21 9.0
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.059
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
++ S CDI V F + RC+ K+ W Y
Sbjct: 126 IFRSSCDIDVEFFPFDEQRCVLKWASWTY 154
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 28.7 bits (61), Expect = 0.059
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C+I V F + CI KF W Y
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGSWTY 181
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.14
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C+I V F + C+ KF W Y
Sbjct: 148 IYKSSCEIDVEYFPFDEQTCVLKFGSWTY 176
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.14
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C+I V F + C+ KF W Y
Sbjct: 144 IYKSSCEIDVEYFPFDEQTCVMKFGSWTY 172
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.31
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C I V F Q CI KF W +
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIMKFGSWTF 174
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 25.8 bits (54), Expect = 0.42
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 199 VVEKETDYFLILS-WLFILVCSVYYF 125
V +E+DY+ L+ WL+IL +YYF
Sbjct: 294 VYAQESDYYPDLNEWLYILSGCLYYF 319
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.8 bits (54), Expect = 0.42
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C+I V F + C KF W Y
Sbjct: 140 IYKSFCEIDVEYFPFDEQTCFMKFGSWTY 168
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.8 bits (54), Expect = 0.42
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
++ S C+I V F Q C KF W Y
Sbjct: 140 IFKSSCEIDVRYFPFDQQTCFMKFGSWTY 168
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
++ S C I + F RC KF W Y
Sbjct: 143 IFKSTCKIDITWFPFDDQRCEMKFGSWTY 171
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Frame = +2
Query: 512 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 610
D CLY+ S C I + F C KF W Y
Sbjct: 96 DGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTY 134
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Frame = +2
Query: 512 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 610
D CLY+ S C I + F C KF W Y
Sbjct: 96 DGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTY 134
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Frame = +2
Query: 512 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 610
D CLY+ S C I + F C KF W Y
Sbjct: 96 DGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTY 134
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 724 LYNTMTLANVTAENKTQNVNE 662
+ N +ANV +TQ++NE
Sbjct: 251 IQNQRVMANVRERQRTQSLNE 271
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 83 LYHLHYHSPP 112
L HLHY PP
Sbjct: 361 LQHLHYRQPP 370
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +2
Query: 524 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 610
+Y S C I V + C+ K W Y
Sbjct: 148 VYKSSCSIDVEFFPYDVQTCVLKLGSWTY 176
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 43 LYVHAGPQIPANYSVPSPL 99
L + AGP PA +PS L
Sbjct: 96 LLLEAGPDEPAGAEIPSNL 114
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,321
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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