Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m07f
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    37   0.002
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    30   0.27 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    30   0.36 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    29   0.47 
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    29   0.47 
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    29   0.82 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.4  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.3  
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    26   4.4  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   4.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   5.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   7.7  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 434 KLLQINPDITTRDVEADCVLVLFYARACPFSAHAAPHFNALSRSY---PNVKMVAVDALK 604
           +L  +N D    D + D VLV FYA  C +    AP +  L + +   PNV++V ++A  
Sbjct: 144 ELDSLNFDKVVMDDKKD-VLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADV 202

Query: 605 YHGINAQYGIIGVPTLK 655
           +  I   + +   PT+K
Sbjct: 203 FADIGRLHEVASFPTIK 219



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 410 LINATYLGKLLQINPDITTRDVEADCVLVLFYARACPFSAHAAPHFN---ALSRSYPNVK 580
           L+ A+ + +L  +N    T        L+ FYA  C      AP +    AL   + +V 
Sbjct: 16  LVFASGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVL 75

Query: 581 MVAVDALKYHGINAQYGIIGVPTL 652
           +  +DA  +  +  +Y I G PTL
Sbjct: 76  IGKIDADTHSDVADKYHITGFPTL 99


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 491 LVLFYARACPFSAHAAPHFNALSRSYPN---VKMVAVDALKYHGINAQYGIIGVPTLK 655
           LV+FYA  C +     P +  L+ +  +   V  V  DA +   + +QY + G PT+K
Sbjct: 52  LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIK 109


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 488 VLVLFYARACPFSAHAAPHFNALSRSYPNVKMVAVDALKYHGINAQYGIIGVPT 649
           V+V F+A  C      AP F   S +Y +   + VD  +   I A+ G+  +P+
Sbjct: 21  VVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPS 74


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 203 DVPNVDESESLLSNVVSDVNKTLTNLYNTMTLANVTAENKTQNVNETRKLVKCKEIVYD- 379
           D+PNV+E   ++     +   T+T L N     +++  N + N+N    + K  EI  D 
Sbjct: 422 DLPNVEEKVEMIE---PNFANTMTTLDNEEINTSISQSNTSPNLNTHENIPKQMEIQSDD 478

Query: 380 --VSEEVEP 400
             V+E++ P
Sbjct: 479 RMVTEDLNP 487


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/85 (22%), Positives = 37/85 (43%)
 Frame = +2

Query: 212 NVDESESLLSNVVSDVNKTLTNLYNTMTLANVTAENKTQNVNETRKLVKCKEIVYDVSEE 391
           N+ +   +L  +++  +   TNL N++   N   EN  +N       V CK     +   
Sbjct: 157 NLKKVGPILERLIASSSMAATNLSNSLVRINPNTENPAKNKQIMVYYVDCKRAHRSLLRY 216

Query: 392 VEPTVELINATYLGKLLQINPDITT 466
           ++    + +  +L  LL+ N +I T
Sbjct: 217 IQ---AIQDEMWLANLLKANDEIVT 238


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 476 EADCVLVLFYARACPFSAHAAPHFNALSRSYPNVKMVAVDALKYHGINAQYGIIGVPTL 652
           E   VLV FYA  C    + AP +  L+  Y +   V V  +     +    I G PT+
Sbjct: 372 ETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVSISGFPTI 430


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +2

Query: 197 LEDVPNVDESESLLSNVVSDVNKTLTNLYNTMTLANVTAENKTQNVNETRKLVKCKEIVY 376
           +++   +D   S L+N+ +  N  LTN+  +    N+T+ +K  ++N+   +    + + 
Sbjct: 134 IKEEERLDPKISTLNNIDAIANLKLTNMVESSQAVNLTS-SKQSSINQQSSVSTDYDDLR 192

Query: 377 DVSEE 391
            +SEE
Sbjct: 193 SISEE 197


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 224 SESLLSNVV--SDVNKTLTNLYNTMTLANVTAENKTQNVNETRKLVKCKEIVYDVSEEVE 397
           S S LS+V   SD ++T+ + YN +     TA  +  + + T    K KE ++       
Sbjct: 143 STSNLSSVSTNSDKSRTIGSNYNMLQSTKSTASQRRMSDSSTPSTTKSKEKIFSPKALSS 202

Query: 398 PT 403
           PT
Sbjct: 203 PT 204


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 191 TQLEDVPNV-DESESLLSNVVSDVNKTLTNLYNTMTLANVTAENKTQNVN 337
           T L+   NV D +E  L       N   T LYN+  L+N T  N+T+++N
Sbjct: 66  THLKSSQNVFDYAEKSLQ--ADSSNLLPTYLYNSEDLSNDTENNETKSIN 113


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 212 NVDESESLLSNVVSDVNKTLTNLYNTMT------LANVTAENKTQNVNETRKLVKCKEIV 373
           NV E E L   + +   K   N+Y+T+T             +K  N  E+  + KC +  
Sbjct: 5   NVKEQEHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSN-KESECIAKCADKF 63

Query: 374 YDVSEEVEPTVELINATYLGK 436
              SE V       NA Y+G+
Sbjct: 64  LKHSERVGQRFAEFNAKYMGQ 84


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 251 SDVNKTLTNLYNTMTLANVTAEN 319
           +D+NKT  N+ N    A+VTA+N
Sbjct: 339 ADINKTEENINNQFQEASVTADN 361


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +2

Query: 362 KEIVYDVSEEVEPTVELINATYL---GKLLQINPDI 460
           KEIVYD+ + +   +++IN   +   G+LL+I  D+
Sbjct: 107 KEIVYDLQKNLASEMDVINTRIVNPTGELLKIVKDV 142


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 233 LLSNVVSDVNKTLTNLYNTMTLANVT-AENKTQNVNETRKLVKCKEIVYDVSEEVEPTVE 409
           L+ N++ D+   L +L +   + N T A NK+Q      +L  C  I+ ++ E       
Sbjct: 111 LVCNIILDIQDPLLSL-SLEAMKNATKASNKSQLTAWENELTTCDHII-NLPENETYVTN 168

Query: 410 LINAT 424
           L NAT
Sbjct: 169 LDNAT 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,796
Number of Sequences: 5004
Number of extensions: 46523
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)