Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m07f
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    29   0.054
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    29   0.054
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.29 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.38 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.38 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.38 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           ++ S CDI V    F + RC+ K+  W Y
Sbjct: 126 IFRSSCDIDVEFFPFDEQRCVLKWASWTY 154


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C+I V    F +  CI KF  W Y
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGSWTY 181


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C+I V    F +  C+ KF  W Y
Sbjct: 148 IYKSSCEIDVEYFPFDEQTCVLKFGSWTY 176


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C+I V    F +  C+ KF  W Y
Sbjct: 144 IYKSSCEIDVEYFPFDEQTCVMKFGSWTY 172


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C I V    F Q  CI KF  W +
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIMKFGSWTF 174


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C+I V    F +  C  KF  W Y
Sbjct: 140 IYKSFCEIDVEYFPFDEQTCFMKFGSWTY 168


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           ++ S C+I V    F Q  C  KF  W Y
Sbjct: 140 IFKSSCEIDVRYFPFDQQTCFMKFGSWTY 168


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 206 VPNVDESESLLSNVVSDVNK----TLTNLYNTMTLANVTAENKTQNVNE 340
           + N  E+ES  S+  + + +    T   + N   +ANV    +TQ++NE
Sbjct: 223 IENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNE 271


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           ++ S C I +    F   RC  KF  W Y
Sbjct: 143 IFKSTCKIDITWFPFDDQRCEMKFGSWTY 171


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  KVISTLGKIYISN*LSVNN 88
           K+IS+L   YISN  + NN
Sbjct: 80  KIISSLSNNYISNISNYNN 98


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  KVISTLGKIYISN*LSVNN 88
           K+IS+L   YISN  + NN
Sbjct: 80  KIISSLSNNYISNISNYNN 98


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  KVISTLGKIYISN*LSVNN 88
           K+IS+L   YISN  + NN
Sbjct: 318 KIISSLSNNYISNISNYNN 336


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
 Frame = -1

Query: 490 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 392
           D  CLY+      S C I +    F    C  KF  W Y
Sbjct: 96  DGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTY 134


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
 Frame = -1

Query: 490 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 392
           D  CLY+      S C I +    F    C  KF  W Y
Sbjct: 96  DGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTY 134


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
 Frame = -1

Query: 490 DTVCLYI------SCCDIRVYLKQFSQIRCIYKFYCWLY 392
           D  CLY+      S C I +    F    C  KF  W Y
Sbjct: 96  DGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTY 134


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 478 LYISCCDIRVYLKQFSQIRCIYKFYCWLY 392
           +Y S C I V    +    C+ K   W Y
Sbjct: 148 VYKSSCSIDVEFFPYDVQTCVLKLGSWTY 176


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 109 YSEECKSCGGFINMFSSNNKT 171
           + E  + C      +SSNNKT
Sbjct: 649 FQENVQLCSEISESYSSNNKT 669


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,974
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)