Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14m02f
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 32 0.46
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 31 0.80
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 29 2.4
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 5.6
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 28 5.6
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949... 28 7.5
01_05_0624 + 23772613-23774671,23774737-23775596 28 7.5
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 27 9.9
>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ FP + GQV I+LPY+ V V+ YS I
Sbjct: 1254 FYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMI 1295
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ FP + GQV I+LPY+ V V+ YS I
Sbjct: 1229 FYRERAAGMYSGFPYAFGQVAIELPYILVQTLVYGVLVYSMI 1270
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ FP + GQV I+ PY V +I YS I
Sbjct: 1256 FYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMI 1297
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ P + GQV ++LPYV V VI Y+ I
Sbjct: 1318 FYRERAAGMYSALPYAFGQVVVELPYVLVQSAVYGVIVYAMI 1359
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ FP + GQV I++PY V +I Y+ I
Sbjct: 1269 FYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMI 1310
>04_03_0477 -
16393764-16394054,16394424-16394672,16394849-16394989,
16395654-16395795,16396287-16396665,16397178-16397436,
16398232-16398288
Length = 505
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 337 QDRKTDRPKTMISIYYFEFNKQKNYY 260
QD+ TD K M++ EF KQ YY
Sbjct: 309 QDQVTDNEKYMVACTKEEFQKQSTYY 334
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 58 PF*VYFLYFNACELGPDF 111
PF ++ +YF +C+LGP+F
Sbjct: 463 PFGLFDVYFASCQLGPEF 480
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 460 FYECGITGVPEVFPVSPGQVKIKLPYVAVL*FPKKVITYSSI 585
FY G+ P + GQV I+ PY V +I YS I
Sbjct: 1258 FYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMI 1299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,909,221
Number of Sequences: 37544
Number of extensions: 247074
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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