Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m02f
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    29   2.9  
U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine rece...    28   6.7  

>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 527 LIFTCPGETGKTSGTPVIPHS*KNMFNIHA 438
           L+F CP E     GT  I HS  +++N+++
Sbjct: 342 LVFVCPDEDSDDDGTVTIEHSDGSIYNLYS 371


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 527 LIFTCPGETGKTSGTPVIPHS*KNMFNIHA 438
           L+F CP E     GT  I HS  +++N+++
Sbjct: 364 LVFVCPDEDSDDDGTVTIEHSDGSIYNLYS 393


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 527 LIFTCPGETGKTSGTPVIPHS*KNMFNIHA 438
           L+F CP E     GT  I HS  +++N+++
Sbjct: 366 LVFVCPDEDSDDDGTVTIEHSDGSIYNLYS 395


>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 472 HIHKKICLIFMRITHFKIDA-TVEYLKNNS 386
           H+H  IC++     HFKI A  V YL+N S
Sbjct: 363 HLHYGICVVRQLCRHFKIYAFDVSYLQNRS 392


>U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein275 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 203 LFINYVNCLCFLIFVGYLIVVIFLFVKFEIIYRNHCFWSVCFPVL-LTSRLSYV 361
           ++    N LCF+I   + +   F+ +     YR  CF   C  +   +SR S V
Sbjct: 266 IYCQSANNLCFIIIAAHGLFSTFIMLYIHSPYREACFRIFCSKITRYSSRFSTV 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,908
Number of Sequences: 27780
Number of extensions: 283677
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)