Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m01f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 220 DINTAYDEESGGYRISIHWDGPADR 294
           ++ T + E +GG  +S+H   P  R
Sbjct: 245 ELITIFGESAGGSSVSLHLISPVTR 269


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 220 DINTAYDEESGGYRISIHWDGPADR 294
           ++ T + E +GG  +S+H   P  R
Sbjct: 245 ELITIFGESAGGSSVSLHLISPVTR 269


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 267 HTLGWTCGPS 296
           H LGW CG S
Sbjct: 529 HVLGWLCGLS 538


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 224 ISKITSSSSEATRRPMWPVSKV 159
           ISK+  S+S   R+P+ PV ++
Sbjct: 9   ISKVDRSTSPLPRKPVNPVQEL 30



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 267 HTLGWTCGPS 296
           H LGW CG S
Sbjct: 582 HVLGWLCGLS 591


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 622  PLRFQRTRYRI*GCYVCVYWNRE 554
            P  F   R R+  CYVC   N E
Sbjct: 1055 PACFDSDRERLYDCYVCYSPNDE 1077


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,065
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)