Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l22r
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        28   0.11 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 557 PGLWPYTLHHESIQDCIIPPCPTASIPGPWVLPMISWRDL 438
           P L   T H +  +D +I   P  S PG  V+   SWR +
Sbjct: 111 PQLGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPI 150


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 378 GRMVQVYPDQLRETLPREQSPVRIPRPRMVHFVKPRHQT 262
           G  +++ P + R  L  EQSP+  P PR+ +    +H++
Sbjct: 192 GPSIRITPAKKRIKL--EQSPLCPPAPRLTNSNSIKHES 228


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 322 EPRSDSSSTNGSFRQTPPSNA 260
           +P SDS+ST      TPP+++
Sbjct: 351 KPISDSTSTTTETVNTPPASS 371


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 346 SRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 251
           ++   S   P+S  SST  S  +   S AL+S
Sbjct: 347 AKQMASPEPPKSSESSTGSSIPKLNLSTALMS 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,157
Number of Sequences: 438
Number of extensions: 5781
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)