Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l12f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   173   2e-44
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   3.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.6  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   8.8  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   8.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.8  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  173 bits (421), Expect = 2e-44
 Identities = 85/163 (52%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
 Frame = +1

Query: 133 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 306
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 307 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 486
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 487 YNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 615
           +NAILED+VFP EI+GKR R   DG + IKV LD     T+++
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDY 166


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 425 LGLGRILRSPTKTTCLPLNFFSSSRTS 345
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 295 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 387
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 453 KEATLKDIDLCVQCYPRGLGLPC 521
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 108  LLHWNDEYEDHQSERC*GGFLRDLDLAGA 194
            + +WND Y + ++ER    FL+DL++  A
Sbjct: 998  ICNWNDSYGEFETER--RYFLQDLEIEDA 1024


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 415 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 540
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 471 P*AWPLLFVSNTSFVAGLRQDLTVSN 394
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 106 YCNYVSRPLLNRFNTIFSN 50
           Y N++ +P+L  F+TI SN
Sbjct: 326 YTNWIQKPILGIFDTIRSN 344


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 602 VCWFLSKCTLMSCEPSNLTLMR 537
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,747
Number of Sequences: 5004
Number of extensions: 45896
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)