Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14l09f
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 131 4e-31
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 130 1e-30
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 62 3e-10
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 55 4e-08
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 44 8e-05
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical pr... 32 0.27
U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region pi... 32 0.27
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 31 0.83
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 30 1.1
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 30 1.5
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 29 1.9
U80026-3|AAC25845.2| 354|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical ... 29 1.9
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 29 2.5
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 29 2.5
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80026-1|AAC25844.1| 355|Caenorhabditis elegans Fucosyl transfe... 29 3.3
AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear recep... 29 3.3
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81484-4|CAE17763.1| 191|Caenorhabditis elegans Hypothetical pr... 28 5.9
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 28 5.9
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 28 5.9
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 28 5.9
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 28 5.9
AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein. 28 5.9
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ... 27 7.7
AC024882-13|AAF60926.1| 342|Caenorhabditis elegans Seven tm rec... 27 7.7
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 131 bits (316), Expect = 4e-31
Identities = 65/139 (46%), Positives = 93/139 (66%)
Frame = +3
Query: 180 GEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAK 359
GE ++ G ++ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAK
Sbjct: 83 GEKMDTSNNAGGVGGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAK 142
Query: 360 NVILGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTG 539
N+ILGGV+ VT+HD K +DLS+Q+YL + +G NRA + E+L+ELN V T
Sbjct: 143 NLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVSTD 202
Query: 540 PLTEDFLRKFRVVVLTGAS 596
LTE+F++ F +VVLT A+
Sbjct: 203 ELTEEFVKTFDLVVLTDAA 221
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 130 bits (313), Expect = 1e-30
Identities = 66/135 (48%), Positives = 93/135 (68%)
Frame = +3
Query: 192 SNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 371
SNN+ G ++ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAKN+IL
Sbjct: 4 SNNAGGV--GGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLIL 61
Query: 372 GGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTGPLTE 551
GGV+ VT+HD K +DLS+Q+YL + +G NRA + E+L+ELN V T LTE
Sbjct: 62 GGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVSTDELTE 121
Query: 552 DFLRKFRVVVLTGAS 596
+F++ F +VVLT A+
Sbjct: 122 EFVKTFDLVVLTDAA 136
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/98 (33%), Positives = 53/98 (54%)
Frame = +3
Query: 255 YSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSS 434
Y RQ+ + G + + S+ + G L EI K+++L GV+S + DD AD+
Sbjct: 10 YDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIGQ 69
Query: 435 QFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTGPLT 548
F+L IG++RA + E+L+ELN V +A + P T
Sbjct: 70 NFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPT 107
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = +3
Query: 246 ESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVAD 425
+S Y +V G + + ++ +L+ G GGLG E+ KN+ L G +++ + D V++
Sbjct: 22 DSAYKVPWFVPGPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSN 81
Query: 426 LSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTGPLT---EDFLRKFRVVV 581
L+ QF E+ +G+++A + + + TA+ + ++F RKF +++
Sbjct: 82 LNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSIII 136
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 44.0 bits (99), Expect = 8e-05
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = +3
Query: 243 DESLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCT 416
D YSRQL V G + + + +VLI G GGLG +A + G+ ++ + D + +
Sbjct: 14 DAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHIS 73
Query: 417 VADLSSQFYLSETVIGQNRALTSCE----QLSELNHYVPTTAYTGPLTEDFLRKFRVV 578
+ +L Q E +G+++A + Q S+LN V T+ + + +V
Sbjct: 74 LDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKNYEIV 131
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +3
Query: 243 DESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVA 422
++++Y RQ+ + G +A ++ +S VLI G LG E+AK + L GV + L D +
Sbjct: 7 EQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDHRLVDTE 66
Query: 423 DLSSQFYLSETV 458
++ F +V
Sbjct: 67 EIGMNFLYDASV 78
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/69 (24%), Positives = 39/69 (56%)
Frame = +3
Query: 297 RMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 476
++ S +L+ G GG+G E+ KN+ + G + V + D +++L+ QF + + ++A
Sbjct: 10 KIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKA 69
Query: 477 LTSCEQLSE 503
T+ + + +
Sbjct: 70 ATATQVVKQ 78
>Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical
protein ZK909.6 protein.
Length = 124
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 93 NCARSCPMS-SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLY 257
N +SC +AE ++ PP+ L T A S N NG V+D ++ +Y
Sbjct: 63 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 118
>U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region
pioneer protein.
Length = 119
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 93 NCARSCPMS-SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLY 257
N +SC +AE ++ PP+ L T A S N NG V+D ++ +Y
Sbjct: 58 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 113
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
assigned gene nameprotein 162 protein.
Length = 2643
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 145 LTPRRKSGN*IQEKRIRTTRQWRTMERAWKMKSTRVCTRA 264
+TP+RK GN + +I +R E AWK K +C A
Sbjct: 517 VTPQRKQGN--ENIQILEVLHFRRNEHAWKNKGKNICKAA 554
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +3
Query: 153 PAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGL 332
P + +LN +AHSNNS + + GA E+ + E + +R+ L D MA D + G+
Sbjct: 237 PVECSELNKNDAHSNNSRL-HIGAD-EEVVQEDVTARK--QLFFDVFSNMADFDNTLVGM 292
Query: 333 G 335
G
Sbjct: 293 G 293
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 240 IDESLYSRQLYV--LGH-DAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKN 410
+D + YSR + + +G + R+ V + G+GG+G +A+ + G+ + L D
Sbjct: 59 VDSNPYSRLMALQRMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDK 118
Query: 411 CTVADLSSQFY 443
+A+++ FY
Sbjct: 119 VEIANMNRLFY 129
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 238 SSSTRAPLFAIAELFECASPVFSFRFFAGGSTELSATSALDIGHERAQFCQNFGCV 71
+++T + L I L CA + + S EL T+ I + AQ C FG V
Sbjct: 417 TTATFSVLIRIGVLLSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGIV 472
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 238 SSSTRAPLFAIAELFECASPVFSFRFFAGGSTELSATSALDIGHERAQFCQNFGCV 71
+++T + L I L CA + + S EL T+ I + AQ C FG V
Sbjct: 417 TTATFSVLIRIGVLLSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGIV 472
>U80026-3|AAC25845.2| 354|Caenorhabditis elegans Hypothetical
protein EGAP9.3 protein.
Length = 354
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 528 Q*WAHSGSVQKVVRTMLKPCSDQLQSLKGRTARKDQPRCNFCRHAK 391
Q + + +++ +R LKP D+ LK RKD+ R C H +
Sbjct: 165 QSFKYFSTIESSIRKWLKPPQDEEMFLKKMIRRKDELRYKHCVHIR 210
>AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical
protein M70.3a protein.
Length = 915
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -3
Query: 258 STDSRRFHLPRALHCSPLPSCSNALLLYLVSAFSPGGQRNYRRLQH*TSGTNAHNFAR 85
S+ S F S + SNA + + S SP Q + H T +NAHN R
Sbjct: 20 SSGSAPFKQSETAKTSDFTAFSNAHNIIIASGSSPSKQSETAKTSHFTDFSNAHNVIR 77
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 291 MRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDK----NCTVADLSSQFYLSETV 458
+ R + VLI G G LG IA+ +I GV+ ++ D+ N V S+F +
Sbjct: 319 LERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEF--EDAR 376
Query: 459 IGQNRALTSCEQLSELNHYVPTTAY 533
+G+ +A T+ + + + TA+
Sbjct: 377 LGRGKAETAQAAIQRIFPSIQATAH 401
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 291 MRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDK----NCTVADLSSQFYLSETV 458
+ R + VLI G G LG IA+ +I GV+ ++ D+ N V S+F +
Sbjct: 319 LERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEF--EDAR 376
Query: 459 IGQNRALTSCEQLSELNHYVPTTAY 533
+G+ +A T+ + + + TA+
Sbjct: 377 LGRGKAETAQAAIQRIFPSIQATAH 401
>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
protein C45G3.1 protein.
Length = 1186
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -2
Query: 325 DIRTSELAIRRIASWPST*SWREYRLSSISSSTR-APLFAIAELFECASPVFSFRFFAGG 149
D+R +E A + S P++ + R SISSS +P+ + E + + + +
Sbjct: 36 DLRATERAF--LESSPTSMNMRTPLNPSISSSVSDSPILSYDE--KANKQIIALATWCNT 91
Query: 148 STELSATSALDIGHERAQFCQN 83
EL + +D+G +A+ C+N
Sbjct: 92 MMELDVSEEMDLGESKAEACRN 113
>Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical
protein F54D1.4 protein.
Length = 536
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 382 FTPPRITFFAISTPKPPRPDIRTSELAIRRIASWPST*S--WREYRLSSISSSTRAPLFA 209
F+PP ++ IS P PP+ T + +S+P+ S YR +S+SS + PL
Sbjct: 421 FSPPSLSPCQISAPPPPQQQY-TDYSQMPSTSSYPANSSPFQSPYRPNSLSSFPKIPLEM 479
Query: 208 IAELFECASP 179
+ E P
Sbjct: 480 TKSIEEFLRP 489
>U80026-1|AAC25844.1| 355|Caenorhabditis elegans Fucosyl
transferase protein 2 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 528 Q*WAHSGSVQKVVRTMLKPCSDQLQSLKGRTARKDQPRCNFCRHAK 391
Q + + ++ ++R +LKP D+ LK RKD+ R C H +
Sbjct: 166 QSFKYFSAIDSLIRKLLKPPIDEEIILKKMIGRKDELRFKNCVHIR 211
>AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear receptor
NHR-7 protein.
Length = 536
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 382 FTPPRITFFAISTPKPPRPDIRTSELAIRRIASWPST*S--WREYRLSSISSSTRAPLFA 209
F+PP ++ IS P PP+ T + +S+P+ S YR +S+SS + PL
Sbjct: 421 FSPPSLSPCQISAPPPPQQQY-TDYSQMPSTSSYPANSSPFQSPYRPNSLSSFPKIPLEM 479
Query: 208 IAELFECASP 179
+ E P
Sbjct: 480 TKSIEEFLRP 489
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 234 DEIDESLYSRQLYVLGHD--AMRRMASSDVLISGLGGLGVEIAKNVIL--GGVKSVTLHD 401
D++ SL ++ VL D +RR +S +L+SG GLG ++ G ++ ++
Sbjct: 304 DDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNA 363
Query: 402 DKNCTVADLS 431
TVADL+
Sbjct: 364 SDARTVADLN 373
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 152 PGEKAETKYRRSAFEQLGNGEQW 220
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 152 PGEKAETKYRRSAFEQLGNGEQW 220
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>Z81484-4|CAE17763.1| 191|Caenorhabditis elegans Hypothetical
protein C47A10.12 protein.
Length = 191
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 225 ALHCSPLPSCSNALLLYLVSAFSPGGQRNYRRLQH*TSGTNAHNFARILVALTIKKKFSS 46
AL+C+PL SC +++S + GQ N ++Q SGT A V +I++ +
Sbjct: 54 ALYCAPLYSCKEDKHNWIMSGEATWGQWNI-QIQWCPSGTTA-------VGYSIRRSNNH 105
Query: 45 NCLKQ 31
+C+ Q
Sbjct: 106 SCIAQ 110
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 162 KRKLNTGEAHSNNSAMANNGARVEDEIDE 248
+R+L + S +S NGA EDE+DE
Sbjct: 443 RRRLRIDQQISRSSRSTGNGADTEDELDE 471
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 152 PGEKAETKYRRSAFEQLGNGEQW 220
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 162 KRKLNTGEAHSNNSAMANNGARVEDEIDE 248
+R+L + S +S NGA EDE+DE
Sbjct: 443 RRRLRIDQQISRSSRSTGNGADTEDELDE 471
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 152 PGEKAETKYRRSAFEQLGNGEQW 220
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein.
Length = 183
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 162 KRKLNTGEAHSNNSAMANNGARVEDEIDE 248
+R+L + S +S NGA EDE+DE
Sbjct: 131 RRRLRIDQQISRSSRSTGNGADTEDELDE 159
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
protein F59F3.5 protein.
Length = 1199
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 151 PRRKSGN*IQEKRIRTTRQWRTMERAWKMKSTRVCTRASSTC 276
P+R+ E IRT+ +W+ E + +K+ R C S C
Sbjct: 66 PKREEHAGFPEIGIRTSAEWKKNEYWFLLKNVRQCDTGSYYC 107
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 111 PMSSAEVADNSV-DPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLY 257
P+ E +D +V +P AKK K + G+A + S + + E DE++Y
Sbjct: 4 PVLKNEDSDLAVREPAAKKSKKSNGKAQAVKSESSESMFMTEATTDENIY 53
>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
protein F40E12.2 protein.
Length = 1251
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 305 RHSTHSVVAQHVELARVQTLVDFIFHARSIVRH 207
+HS + + + + TLVDF F A IVRH
Sbjct: 1115 KHSDSKIEKKWQSMHAMYTLVDFSFLAECIVRH 1147
>AC024882-13|AAF60926.1| 342|Caenorhabditis elegans Seven tm
receptor protein 164 protein.
Length = 342
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 198 CSNALLLYLVSAFSPGGQRNYRRL 127
C N+LL+YL+ SP NYR L
Sbjct: 21 CLNSLLIYLILTKSPKKMGNYRYL 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,171
Number of Sequences: 27780
Number of extensions: 307895
Number of successful extensions: 1014
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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