Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l04r
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.5  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 92  RFYSNSELTTYKQMQVTASSG 30
           R+ + + LTT+K +Q   SSG
Sbjct: 44  RYRTKNSLTTHKSLQHRGSSG 64


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 53  FAYMSSVHCYCRICISILWFVVCKW 127
           F  ++ V  YC+ CIS   F V  W
Sbjct: 288 FFCVNIVTSYCKTCISGRAFQVLTW 312


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 391 PAMDLDDDENGPALPTRASEEFRP 320
           P    DDD  GPA P    E+  P
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSP 502


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 458 CHICVGYLPFKLVHCILNAEN*SCYGFR 375
           C I V Y PF    C+L   + +  GF+
Sbjct: 153 CEIDVEYFPFDEQTCVLKFGSWTYDGFK 180


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 44  LPAFAYMSSVHCYCRICISILWFVVCKW 127
           LP F  M  V  +CR CI    F V  W
Sbjct: 23  LPFFT-MYLVRAFCRNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 44  LPAFAYMSSVHCYCRICISILWFVVCKW 127
           LP F  M  V  +CR CI    F V  W
Sbjct: 471 LPFFT-MYLVRAFCRNCIHPTVFSVLFW 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,301
Number of Sequences: 438
Number of extensions: 5201
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)