Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14l04f
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 127 8e-30
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 77 1e-14
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 31 0.97
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 29 3.9
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 28 5.2
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 6.8
04_04_0629 + 26707354-26707464,26707614-26707688,26708346-267084... 28 6.8
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 27 9.0
05_02_0045 - 5972122-5972274,5974041-5974070,5976206-5977030,597... 27 9.0
03_02_0217 - 6512889-6513908 27 9.0
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 127 bits (306), Expect = 8e-30
Identities = 64/134 (47%), Positives = 82/134 (61%)
Frame = +3
Query: 207 MDGNDLSSEITRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQ 386
MDG S ++ T S+ +Q LDR TPHA RW+G+ V A + +R+ Q
Sbjct: 64 MDGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQ 123
Query: 387 GWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKF 566
G+YIVTY LGIY LNL I FL+P +DP +GPALPTR S+EF+PFIRRLPEFKF
Sbjct: 124 GFYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKF 183
Query: 567 WLSVTKSTLIAFCC 608
+ + L+ F C
Sbjct: 184 CI---HTILLTFIC 194
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 276 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 455
S+ +Q LDR TPH RW+ A V AA+ +R+ G+YIVTYALGIY LNL IAFL+P
Sbjct: 41 SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100
Query: 456 KIDP 467
++DP
Sbjct: 101 QVDP 104
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 237 TRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 353
T+ G RI++ Y+S+ WTP A +G ALV+
Sbjct: 532 TQNPATQNGSVRINKWYESSARAWTPSAAASSIGQALVV 570
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 13 GANFQLLNFILINCFQINNLKYYAISKIYIVSLFNA 120
GAN++L++ + NC N ISKIY+++ FN+
Sbjct: 112 GANYRLIDIPVSNCLNSN------ISKIYVLTQFNS 141
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 13 GANFQLLNFILINCFQINNLKYYAISKIYIVSLFNA 120
GAN++L++ + NC N +SKIY+++ FN+
Sbjct: 95 GANYRLIDIPVSNCLNSN------VSKIYVLTQFNS 124
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 239 KKRNIVSRLDTNIAGLSEYIRQMDPSRKDTVGWK 340
KKR +L T++ G EY DP KD W+
Sbjct: 615 KKRRPRPKLSTSLFGQPEYPADADPEPKDARQWE 648
>04_04_0629 +
26707354-26707464,26707614-26707688,26708346-26708420,
26709422-26709572,26709724-26709766,26710085-26710134,
26710221-26710261,26710364-26710408
Length = 196
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 517 LVKNLDHSLDGYQNSSFGCPLPKAL 591
LVK L ++ G Q+S + CPLP L
Sbjct: 139 LVKLLVNAFKGIQSSRYDCPLPSGL 163
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +3
Query: 216 NDLSSEITRKGILSQGWTRI---SQVYQSTLDRWTPHAKTRWVGS 341
N LS ++T+K ++++GW+ + SQ+ Q L R T +K++ VGS
Sbjct: 292 NMLSLDVTKKCLVAEGWSPVFATSQI-QDALQRATVDSKSQ-VGS 334
>05_02_0045 -
5972122-5972274,5974041-5974070,5976206-5977030,
5977110-5977196,5977294-5977395
Length = 398
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +3
Query: 285 YQSTLDRWTP-----HAKTRWVGSALVMAAFIIR 371
YQS L+RW H W+G A + +AFI++
Sbjct: 307 YQSRLNRWNAWLWHNHFSNPWLGFAAITSAFIMQ 340
>03_02_0217 - 6512889-6513908
Length = 339
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 498 PALPTRASEEFRPFIRRLPEFK 563
P +P ASEEFR F+ R E K
Sbjct: 277 PEMPAAASEEFRDFVSRCLEKK 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,463
Number of Sequences: 37544
Number of extensions: 310892
Number of successful extensions: 667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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