Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l04f
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.78 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 6   MIWCKLPT-PQFYSNKLFSNK*LEVLRYIKNIHS--KSV*CGEKFKITYNLFDICSNYL 173
           +++  +P    FYS +  +N+ LE LR++  + S   ++    KFK    +  I S Y+
Sbjct: 789 VLFASMPNFADFYSEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTYM 847


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 465 PAMDLDDDENGPALPTRASEEFRP 536
           P    DDD  GPA P    E+  P
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSP 502


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 398 CHICVGYLPFKLVHCILNAEN*SCYGFR 481
           C I V Y PF    C+L   + +  GF+
Sbjct: 153 CEIDVEYFPFDEQTCVLKFGSWTYDGFK 180


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 413 QRICDNIPSLFSNYAD 366
           + I D +P+L SNY +
Sbjct: 891 KHILDKLPTLISNYIE 906


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,049
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)