Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l02r
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05448-1|AAA36586.1|  275|Homo sapiens protein ( Human RNA polym...    63   1e-09
CR542041-1|CAG46838.1|  275|Homo sapiens POLR2C protein.               63   1e-09
BC028157-1|AAH28157.1|  275|Homo sapiens polymerase (RNA) II (DN...    63   1e-09
BC003159-1|AAH03159.1|  275|Homo sapiens polymerase (RNA) II (DN...    63   1e-09
BC000409-1|AAH00409.1|  275|Homo sapiens polymerase (RNA) II (DN...    63   1e-09
AJ224144-1|CAA11843.1|  275|Homo sapiens RNA polymerase subunit ...    63   1e-09
AJ224143-1|CAA11842.1|  275|Homo sapiens RNA polymerase II subun...    63   1e-09
AF008443-1|AAC14355.1|  275|Homo sapiens RNA polymerase II subun...    63   1e-09
AC004382-7|AAC24309.1|  275|Homo sapiens RNA polymerase II subun...    63   1e-09

>J05448-1|AAA36586.1|  275|Homo sapiens protein ( Human RNA
           polymerase subunit hRPB 33, mRNA. ).
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>CR542041-1|CAG46838.1|  275|Homo sapiens POLR2C protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>BC028157-1|AAH28157.1|  275|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide C, 33kDa protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>BC003159-1|AAH03159.1|  275|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide C, 33kDa protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>BC000409-1|AAH00409.1|  275|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide C, 33kDa protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>AJ224144-1|CAA11843.1|  275|Homo sapiens RNA polymerase subunit
           protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>AJ224143-1|CAA11842.1|  275|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>AF008443-1|AAC14355.1|  275|Homo sapiens RNA polymerase II subunit
           hRPB33 protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


>AC004382-7|AAC24309.1|  275|Homo sapiens RNA polymerase II subunit
           hRPB33 protein.
          Length = 275

 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = -3

Query: 731 KTRXMAQSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 552
           K     +SE++EL+ED+ +A ++   KP +F+YNVES G+L+PE IVL  +         
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258

Query: 551 XXXXLAQEAQNDALAIN 501
               L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,737,557
Number of Sequences: 237096
Number of extensions: 1612486
Number of successful extensions: 2039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)