Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14l02f
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 118 5e-28
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 77 2e-15
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 27 1.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.9
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 2.9
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 3.8
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.0
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 118 bits (285), Expect = 5e-28
Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 4/162 (2%)
Frame = +1
Query: 139 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 318
++ + I +S +V FV+ +T L+VANS+RRV +AE PT+AID V++ N++V+ DEFL
Sbjct: 3 SETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
Query: 319 AHRIGLIPLISDDVVDK----IRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
AHR+G+IPL S ++ + + Y+R+C C +C +CSVE L+ KCT E T + DL
Sbjct: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLR 612
VV S AD ++ LI KLRK QE+ LR
Sbjct: 123 ------VVSSNSSLGHPILAD-PKSRGPLICKLRKEQEISLR 157
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 77.0 bits (181), Expect = 2e-15
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V IT L E + F + + S+AN+ RR+ IAE PT+A ++V + N++++ DE L+HRI
Sbjct: 48 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107
Query: 331 GLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-------TDEQ--TRHVTTA 480
GL+P+ +D D+ ++ +V F+L+ KC TDE+ R +
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNS 167
Query: 481 DLKSSDPRVVPV-TSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
++ S D P R D +I++ KLR GQE+ L A+
Sbjct: 168 EVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAH 214
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 419 LHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 279
L S QKST ++ +L+ + + +G+ RC +S L + L N
Sbjct: 74 LSSNQKSTSKSNQMIKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -3
Query: 515 TGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQ---KSTHMQSREYLILSTTSSDM 345
+ TT SL S + L SS+ +S +S+ S ST+ + S TSS +
Sbjct: 122 SSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Query: 344 SGMRPMRCAKNSSLKTVELASNCTQSMAIVGVSA 243
S A +SSL + L S + + +S+
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSS 215
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 2.9
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +1
Query: 124 KMPYANQPSVHITELSDENVKFVVED 201
+ P A+ P+++ + + EN++ ++ED
Sbjct: 83 RQPIADVPAIYFVQPTQENIELIIED 108
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 492 RFQISSCYMSCLFICA 445
RF +S CY++CL C+
Sbjct: 181 RFPVSECYLACLKACS 196
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 220 NSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMC 396
NS+ V A+ P+M ID + L N + + + L P I++ D V D
Sbjct: 182 NSLVCVSFAQNPSMLIDSIDLVRNMPDFTKK--TDMLNLFPRIAEHDAVLSTSLHADPQF 239
Query: 397 VDFCSEC 417
+DF C
Sbjct: 240 LDFLESC 246
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 226 YCLLRLIR-YLPQRILHFHQIVLLCEQRVDLRKAFSV 119
+C+ R ++ P++I H H I LL E+ D+ K FS+
Sbjct: 35 HCISRSLKDEYPRKIKH-HSIDLLNEEPKDIAKKFSL 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,091
Number of Sequences: 5004
Number of extensions: 48623
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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