Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14l02f
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0053 + 873918-874411,875255-875492,875682-875702                150   1e-36
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885...    69   2e-12
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919...    67   9e-12
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    30   1.7  
08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790     29   3.9  
06_01_0288 - 2106113-2109055                                           27   9.0  

>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score =  150 bits (363), Expect = 1e-36
 Identities = 85/174 (48%), Positives = 112/174 (64%), Gaps = 13/174 (7%)
 Frame = +1

Query: 133 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 312
           Y   P V I EL D+  KF + DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 10  YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 69

Query: 313 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTD-EQTRHVTTA 480
           F+AHR+GLIPL S   +  +R+SRDC   D    C  CSVEF L  + TD +QT  VT+ 
Sbjct: 70  FIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 128

Query: 481 DLKSSDPRVVPVTSRHRDE---------DQADYGEADEILIIKLRKGQELKLRA 615
           DL+S+DP+V PV      +         D A   +   ILI+KLR+GQEL+LRA
Sbjct: 129 DLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRA 182


>02_05_0574 -
           30086264-30086367,30087653-30087746,30088293-30088555,
           30089122-30089202,30089293-30089422,30089545-30089730,
           30090013-30090138
          Length = 327

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 52/68 (76%)
 Frame = +1

Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
           V I+ L++++++F +   + S+AN+ RR+ IAE PTMAI+ V +  N++V++DE L+HR+
Sbjct: 72  VEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRL 131

Query: 331 GLIPLISD 354
           GLIPL +D
Sbjct: 132 GLIPLDAD 139


>03_02_0668 -
           10290541-10290644,10290777-10290911,10291812-10291905,
           10291994-10292089,10292458-10292639,10293578-10293658,
           10293746-10293875,10293996-10294181,10294567-10294692
          Length = 377

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 30/68 (44%), Positives = 51/68 (75%)
 Frame = +1

Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
           V +  L++++++F +   + S+AN+ RR+ IAE PTMAI+ V +  N++V++DE L+HR+
Sbjct: 72  VVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRL 131

Query: 331 GLIPLISD 354
           GLIPL +D
Sbjct: 132 GLIPLDAD 139


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 455 SSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 279
           S++H+ +  N+ L              + L+ +S+ +SG  P+  AK  +L T++L+ N
Sbjct: 270 STLHYLNLANNNLEGPIPDNISSCMNLISLNLSSNYLSGAIPIELAKMKNLDTLDLSCN 328


>08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790
          Length = 317

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 316 RIHRSKRWN*LLTVPNRWPLLVFQR*IRVSYCLLRLIRYLPQRILH 179
           R+   +R+  L  +P RW  L  Q+ IR   C  +L R LP+  L+
Sbjct: 6   RLRHQRRYYRLRLLPPRWGSLRPQQYIRALTCNCKLSRSLPKHTLN 51


>06_01_0288 - 2106113-2109055
          Length = 980

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 455 SSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 279
           S +H     N+ LH E  ST        ILS   + +SG  P      + L  ++L SN
Sbjct: 592 SRLHTIDFSNNNLHGEIPSTMGFITSLAILSLRENSLSGTLPSSLQSCNGLIILDLGSN 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,284
Number of Sequences: 37544
Number of extensions: 288519
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)