Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14l02f
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 271 1e-72
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 271 1e-72
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 271 1e-72
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 271 1e-72
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 271 1e-72
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 271 1e-72
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 271 1e-72
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 271 1e-72
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 271 1e-72
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 73 8e-13
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 73 8e-13
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 73 8e-13
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 73 8e-13
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 73 8e-13
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 64 5e-10
AL121993-4|CAI22739.1| 943|Homo sapiens WD repeat domain 3 prot... 29 9.9
AF083217-1|AAD45865.1| 943|Homo sapiens WD repeat protein WDR3 ... 29 9.9
AB209201-1|BAD92438.1| 466|Homo sapiens WD repeat-containing pr... 29 9.9
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 271 bits (665), Expect = 1e-72
Identities = 120/164 (73%), Positives = 148/164 (90%)
Frame = +1
Query: 127 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 306
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 307 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 486
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 487 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 618
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAY
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 72.9 bits (171), Expect = 8e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 331 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 510
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 511 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKL 609
V +RH +QAD + E D+ILI +LR GQE+ L
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 210
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 72.9 bits (171), Expect = 8e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 43 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 102
Query: 331 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 510
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 103 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 154
Query: 511 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKL 609
V +RH +QAD + E D+ILI +LR GQE+ L
Sbjct: 155 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 202
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 72.9 bits (171), Expect = 8e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 331 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 510
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 511 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKL 609
V +RH +QAD + E D+ILI +LR GQE+ L
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 210
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 72.9 bits (171), Expect = 8e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 331 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 510
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 511 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKL 609
V +RH +QAD + E D+ILI +LR GQE+ L
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 210
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 72.9 bits (171), Expect = 8e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 331 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 510
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 511 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKL 609
V +RH +QAD + E D+ILI +LR GQE+ L
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 210
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 63.7 bits (148), Expect = 5e-10
Identities = 25/68 (36%), Positives = 48/68 (70%)
Frame = +1
Query: 151 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 330
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 50 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 109
Query: 331 GLIPLISD 354
GLIP+ +D
Sbjct: 110 GLIPIHAD 117
>AL121993-4|CAI22739.1| 943|Homo sapiens WD repeat domain 3 protein.
Length = 943
Score = 29.5 bits (63), Expect = 9.9
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 524 RDVTGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTT 357
RDV G + LD+ C S V F ++ S H E+K + RE LIL+ T
Sbjct: 892 RDVIGFNMAGLDYLKR--ECEAKSEVMFFADATS--HLEEKKRKRKKREKLILTLT 943
>AF083217-1|AAD45865.1| 943|Homo sapiens WD repeat protein WDR3
protein.
Length = 943
Score = 29.5 bits (63), Expect = 9.9
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 524 RDVTGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTT 357
RDV G + LD+ C S V F ++ S H E+K + RE LIL+ T
Sbjct: 892 RDVIGFNMAGLDYLKR--ECEAKSEVMFFADATS--HLEEKKRKRKKREKLILTLT 943
>AB209201-1|BAD92438.1| 466|Homo sapiens WD repeat-containing
protein 3 variant protein.
Length = 466
Score = 29.5 bits (63), Expect = 9.9
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 524 RDVTGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTT 357
RDV G + LD+ C S V F ++ S H E+K + RE LIL+ T
Sbjct: 415 RDVIGFNMAGLDYLKR--ECEAKSEVMFFADATS--HLEEKKRKRKKREKLILTLT 466
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,987,993
Number of Sequences: 237096
Number of extensions: 1580494
Number of successful extensions: 6560
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6555
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -