Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k13f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.9  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   6.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.0  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 177 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL 272
           S+P +   +  L  +WL H  ++L +HG ++YL
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYL 418


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 56  QNIPNFDKMTKPIPYNTGD 112
           QN PN +K+  P P NTG+
Sbjct: 423 QNAPNTNKLGNPQPDNTGN 441


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 494 YSNILTPSYLYFIQYFNNSSRKTLFFVTVPLK 399
           Y NILT +Y    Q  ++ S+ +L  + V LK
Sbjct: 621 YKNILTRNYRVLTQSISSGSQISLLNIVVELK 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,248
Number of Sequences: 5004
Number of extensions: 45534
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)