Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k11r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 458 SLYEPDLIIVFMYWLLYREVI 520
           S Y P  ++VF Y+ +YR  +
Sbjct: 214 SFYLPLFVMVFTYYKIYRAAV 234


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 139 LMGLNTIITKFFGFNEVLTF 198
           L+G N   +KFF  +E+L+F
Sbjct: 49  LIGANEHYSKFFPVSEILSF 68


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 365 LVGIRAYGPPDGEWLPL 315
           L+G R   PP  +W PL
Sbjct: 408 LIGSRRTSPPPEDWKPL 424


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 139 NNSVYIVDNPESLVV 95
           N  VY+VDN  +L++
Sbjct: 199 NTMVYMVDNKNTLII 213


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 341 PPDGEWLPLPMDFSNARG 288
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,496
Number of Sequences: 438
Number of extensions: 4487
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)