Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k11f
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0107 - 8362468-8362488,8363212-8363349,8364390-8364500           45   6e-05
11_04_0112 - 13585293-13585988,13586095-13586619                       31   1.0  
04_03_0642 + 18289461-18290897,18291586-18291666                       28   5.5  
12_02_0836 + 23550376-23550470,23551617-23551803                       27   9.7  
08_01_0893 - 8789491-8791416                                           27   9.7  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    27   9.7  
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524...    27   9.7  

>11_02_0107 - 8362468-8362488,8363212-8363349,8364390-8364500
          Length = 89

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +2

Query: 167 MQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQN 316
           MQ    +CA +C D  +S  E ++ C+ENC+ P+  ANN V+ E+  FQ+
Sbjct: 36  MQQAYFKCAYECFDRRRSQ-EGINNCVENCSVPVLTANNVVETEMAKFQD 84


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 242 SHEPFPMRIVYRHSIWMHIYACHLAFFVN 156
           SH  +P  I+  HS+W+ +    LAFF++
Sbjct: 281 SHRSWPSFIIAMHSLWLSLICMLLAFFIS 309


>04_03_0642 + 18289461-18290897,18291586-18291666
          Length = 505

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +2

Query: 86  MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKC 202
           +++++ +R+EQE T+++  L  SY+   Q D+ RC S C
Sbjct: 367 ILKSELWRLEQEETDILPALRLSYVYLPQ-DIKRCFSIC 404


>12_02_0836 + 23550376-23550470,23551617-23551803
          Length = 93

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/49 (20%), Positives = 25/49 (51%)
 Frame = +2

Query: 287 VQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVK 433
           +++ +  + + ++RC  DC DT R +      +  + +C   F K +++
Sbjct: 29  IRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMR 77


>08_01_0893 - 8789491-8791416
          Length = 641

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 257 YSFLCSHEPFP--MRIVYRHS 201
           YSFL  H P P  MR+V RHS
Sbjct: 493 YSFLPKHSPLPLRMRLVKRHS 513


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 161 RKMQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQ--NEINHFQNRL 322
           R M+ ++ +   KC +D    L    GC E     LN+ +NYVQ  +E++  +++L
Sbjct: 72  RSMEEEISKL-QKCLNDKDEQLRSSTGCTEQMHF-LNNYSNYVQYFHELDDLRSKL 125


>04_04_1650 -
           35051728-35051823,35052054-35052162,35052270-35052416,
           35052516-35052637,35052726-35052825,35052895-35053095,
           35053202-35053407,35053778-35053803,35054239-35054327,
           35054427-35054635,35055577-35055672,35055754-35055924
          Length = 523

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 107 RIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLN 271
           R+  ++   VNEL    +  ++ + HR  +KC       LE +  C+ +    L+
Sbjct: 127 RVGNDVHERVNELLSKAIHGLENEFHRLLTKCSKPV--DLENIFNCLSSLNRQLS 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,428
Number of Sequences: 37544
Number of extensions: 342190
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)