Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14k06f
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 31 0.14
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.76
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 28 1.0
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 27 2.3
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 27 3.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.1
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.4
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 5.4
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 25 9.4
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 271 LNYPERPSSYLGAHTVGSPLA*ASAASHQVPSGSVPMLTVMRSTREELTTKVTSFRP 441
L ERPSSYLG H SP ++ +PS P ST + ++ ++ P
Sbjct: 142 LQLSERPSSYLGYHNNLSPYRSPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRTYHP 198
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.76
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Frame = -1
Query: 438 PERCHLRGELFPRRSHHRQHRYRP*GHLVGC----CAGLSKRGPNGMCSKVARRSLRVIQ 271
P+ LR L +RP + C C + RGP C + + L
Sbjct: 565 PKGAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHFCQHMCHRGPCPRCLEASFEELPCTC 624
Query: 270 GPLRLLPPLAQNPP 229
G RL PP+A P
Sbjct: 625 GRTRLYPPVACGTP 638
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = +1
Query: 190 TQCIRGIFIHHLPGRILCKWWKKPKRSLNYPERP---SSYLGAHTVGSPLA*ASAASHQV 360
T + I H+PG + C + S + S+ L A + + + +S +
Sbjct: 416 TSNLSAIVDQHIPGALTCSQYPTSVASTQLVQTSHFTSTSLSAVNISESVVYSYTSSSSM 475
Query: 361 PSGSVPMLTVMRSTREELTTKVTSFRPKS 447
PS ++P + ++ + SF P S
Sbjct: 476 PSSAIPSFNISLISQNAVANAGNSFSPLS 504
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 PKRSLNYPERPSSYLGAHTVGSPLA*ASAASHQVP-SGSVPMLTVMRSTREELTTKVTS 432
P+ S N P PS+ +V SP S A+H + GS P + T LT K +S
Sbjct: 328 PQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGSSPYVVHSNHTNNTLTDKESS 386
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 188 LPNASGVFLSTTSRGGFCASGGRSRSGP*ITRRDRRATLEHIPLGPRLLKPAQHPTRCP 364
LP + T S G C S + +SG IT+R + T++ + P P P P
Sbjct: 211 LPRGRRCDMCTLSSKGLCPSAFKEKSGITITKR-KVKTIKRVKKRPASESPPLSPLSLP 268
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 526 PCSPGSSRQMAKSRPALSRLAPQLTGRSFTSAGSIM 633
P PG + MA R + +APQ TG G M
Sbjct: 720 PQMPGMQQPMAPQRTGMQPMAPQRTGMQPQMTGGPM 755
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 526 PCSPGSSRQMAKSRPALSRLAPQLTG 603
P PG + MA R + +APQ TG
Sbjct: 654 PQMPGMQQPMAPQRTGMQPMAPQRTG 679
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 610 SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRT 491
S S A AS PG + P V + N TS +W T
Sbjct: 294 SLSSLASTGASYRPGPSKPLVSRVRDNYANTSYESWPHST 333
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 561 VPPGAVEAGSTADGEKLYFGRVN 629
VPP A+ A + DG +Y GR N
Sbjct: 396 VPPWAMSACWSPDGNNIYIGRRN 418
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 226 PGRILCKWWKKPKRSLNYPERPSSYLGAHT 315
PG W +KP+ + P PS+ +HT
Sbjct: 90 PGNPYVIWHRKPEMKVGSPYTPSTRPASHT 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,997
Number of Sequences: 5004
Number of extensions: 49301
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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