Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k06f
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761...    33   0.20 
11_05_0030 - 18487272-18487544                                         31   1.0  
12_02_1217 + 27082452-27083593,27085041-27085158                       29   2.4  
10_08_0058 + 14521922-14522779                                         29   3.2  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   3.2  
09_06_0210 - 21597470-21598093                                         28   5.6  
08_02_0723 - 20422219-20423796                                         28   7.4  
04_04_1330 - 32700333-32700770                                         28   7.4  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    28   7.4  
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186...    28   7.4  
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    27   9.7  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   9.7  
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    27   9.7  

>07_03_1619 +
           28174991-28175804,28175945-28175968,28176075-28176170,
           28176285-28176466,28176623-28176836,28177262-28177499,
           28177709-28177865,28177950-28178246
          Length = 673

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 583 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 488
           +STA GG  PF E+C +  DGT   N +++++
Sbjct: 20  SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51


>11_05_0030 - 18487272-18487544
          Length = 90

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +3

Query: 546 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 638
           ST G+ P G  EAGS ADG K   G V  DG
Sbjct: 27  STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55


>12_02_1217 + 27082452-27083593,27085041-27085158
          Length = 419

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 369 VGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACY 470
           VG+DADGD++Y G    E    P    P     Y
Sbjct: 50  VGSDADGDDLYGGELEEEDSPRPPPPRPLSGLFY 83


>10_08_0058 + 14521922-14522779
          Length = 285

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 619 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 485
           P  S  P+A+  ++T P  T P  +   + +D      WS+R+SS
Sbjct: 7   PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 624 PCRSKASPRQLWSQPRQRRAGLRHLSRT 541
           P R    PR++WS PR R   LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373


>09_06_0210 - 21597470-21598093
          Length = 207

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 167 PSWCHRLLPNASGVFLSTTSRGGFCASGGRSRSGP*ITRR 286
           P W   L P +         + G CA+GGR R G  + RR
Sbjct: 39  PGWPGSLWPASPATGGRRVRKDGACATGGRRRRGRCVRRR 78


>08_02_0723 - 20422219-20423796
          Length = 525

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -1

Query: 417 GELFPRRSHHR---QHRYRP*GHLVGCCAGLSK 328
           G  FPRR HHR      +R  G  VGC  G  +
Sbjct: 417 GRRFPRRVHHRGASMVSHRADGRFVGCVQGYDR 449


>04_04_1330 - 32700333-32700770
          Length = 145

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 357 GALRVGTDADGDEIYAGRAHHEGD 428
           G+ R G  +DG+E+  GR  HEG+
Sbjct: 20  GSRRRGGGSDGEELGGGRDEHEGE 43


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 434 NDVTFVVSSSRVDLITVSIGTDP 366
           NDVT  +SSS +D   +SIG  P
Sbjct: 416 NDVTIALSSSNLDKFLMSIGRQP 438


>02_01_0279 -
           1860410-1860508,1861536-1861889,1862660-1862805,
           1862885-1862925,1863010-1863173,1863217-1863281,
           1863410-1863670,1863754-1863817,1863946-1864006,
           1864112-1864473
          Length = 538

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 339 GLSKRGPNGMCSKVARRSLRVIQGPLRLLPPLAQNPPREVVDKNTPDALGS 187
           G+ K G  G C+ +  RSL +  G  R +PP   N   E +DK    +LG+
Sbjct: 416 GVYKLGDFG-CATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGA 465


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 191 PNASGVFLSTTSRGGFCASGGRSRSGP*ITRRDRRA 298
           P   G FLS+ S GG  +SGG  R    +  RDR A
Sbjct: 601 PRVKGQFLSSISNGGRRSSGGAGRDAGRV--RDRLA 634


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 98   KPVWGRRGRSPTVILSW 48
            K + GRRGR+PT++  W
Sbjct: 1123 KGLMGRRGRTPTIVFVW 1139


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 564 GLRHLSRTARRTWMVLVPQTGLLEPL 487
           G RHL+ T   TWM L+P+  L  P+
Sbjct: 77  GDRHLTPTDESTWMSLMPRRLLASPV 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,365
Number of Sequences: 37544
Number of extensions: 406791
Number of successful extensions: 1464
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)