Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k06f
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    31   0.010
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 199 IRGIFIHHLPGRILCKWWKKPKRSLNYPERPSSYLGAHTVGS 324
           +R +FIH LP  ++ + +  P +  +Y  RP   +   ++GS
Sbjct: 341 VRRVFIHVLPRLLVMRRYNTPSKRSDYDSRPQYQIDKRSMGS 382


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 449 NDFGRNDVTFVVSSSRVD 396
           NDF  NDV F +  + VD
Sbjct: 394 NDFNFNDVNFRILGANVD 411


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 164 VPSWCHRLLPNASGVFL 214
           VP+WC R+L N +   L
Sbjct: 337 VPAWCDRVLLNPTDKML 353


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 568 GGTSPFVENCQANMDGTSTSNWSFRTSSPP 479
           GG  P +    +   GTS S W   T S P
Sbjct: 71  GGEQPTLRLLCSIAGGTSESQWEDVTGSTP 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,088
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)