Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k02r
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 551 NVKIIILVIGGALRAFCMKPPI 486
           N+ +I L I   L  FCM PP+
Sbjct: 88  NLFVINLAISNFLMMFCMSPPM 109


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 247 FKDQEDKKVEEYINYLFSTLLSNY 318
           FKD +DK  EEY  Y    L S++
Sbjct: 398 FKDLQDKYYEEYKMYELGELASSF 421


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 429 LVCNRKVIDFSRNNMSLK 376
           L+C+++ +D S NN+S++
Sbjct: 338 LICDKRFVDESANNLSIE 355


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 429 LVCNRKVIDFSRNNMSLK 376
           L+C+++ +D S NN+S++
Sbjct: 353 LICDKRFVDESANNLSIE 370


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 551 NVKIIILVIGGALRAFCMKPPI 486
           N+ +I L I   L  FCM PP+
Sbjct: 54  NLFVINLAISDFLMMFCMSPPM 75


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 718 ARTLWNKTRKTRMSRPLRKRMDGNCSERSGKRNPQRTETPRTGRP 584
           +R  ++++R+        +R      ERS +R+  RTE  R+  P
Sbjct: 35  SRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREP 79


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 718 ARTLWNKTRKTRMSRPLRKRMDGNCSERSGKRNPQRTETPRTGRP 584
           +R  ++++R+        +R      ERS +R+  RTE  R+  P
Sbjct: 35  SRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREP 79


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 718 ARTLWNKTRKTRMSRPLRKRMDGNCSERSGKRNPQRTETPRTGRP 584
           +R  ++++R+   +    +R      ERS +R+  RTE  R+  P
Sbjct: 268 SRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREP 312


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 250 KDQEDKKVEEYINYLFSTLLSNYYSTSG 333
           K Q  K    YI++LF  L  N  +T G
Sbjct: 290 KIQTLKLATRYIDFLFQVLHCNMENTEG 317


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 590 SSPWGLRSLWVSFS*SFGAVPIHSLSQWT*HTCFSGLV 703
           S P   RSL  S+  S G  P+ S S    HT F G +
Sbjct: 55  SVPQPPRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSI 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,463
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)