Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k02f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   3.0  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.2  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.9  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   9.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   9.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.1  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 210 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 326
           +  +  +LT+ PN    L+T+H    S Y Y LK+    DS+N
Sbjct: 33  FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 417 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 572
           HL  +E +      V+L L+Y    L K    ++ LL Q  E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 362
           T+   +++ L+T  S   YVLK + +   +NV  V  Q E +N
Sbjct: 50  TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 92  EATTGAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 217
           +A+  A   YP+   P    A  R +LRD  A P+    LR+
Sbjct: 530 KASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 559 TNCRTSTTPVW 591
           TNC+T TTP+W
Sbjct: 636 TNCQTRTTPLW 646


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 135 DHEQVKLLAER--LYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMN 308
           D+EQV  L +   L G +++   +  GY +   +  EDP+ +  L          L++  
Sbjct: 614 DYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELAR 673

Query: 309 SIDSQNV 329
           +ID   V
Sbjct: 674 TIDRPEV 680


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 411 FGHLHSIEDLGGKKHAVRLLEYVPGE 488
           +G LH I++LGG +  + L+E V  +
Sbjct: 71  YGLLHDIKELGGTEEDLELIEDVESD 96


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -3

Query: 617  EHPHVLSADQTGVVEVLQFVIQISDKFS--ELIQESFGQGTVLQELSRYILQQSYGVFLA 444
            E  H+       V+ V++ +     K+   E + +      V   ++R ++Q+    F+A
Sbjct: 930  EQLHIQKMVSKSVMPVVERLRSQGKKYQLVEAVVDDLIGAKVAPVIARQVMQRVVKKFIA 989

Query: 443  SQVLDGV*MTEYIPYWL 393
             QV++   + EY+ + L
Sbjct: 990  GQVVEATELLEYLSFSL 1006


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 474 YVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSR 599
           ++ G  LK   L E + Y +G+ +    NKL   + +  VSR
Sbjct: 449 HISGRTLKEISLDEPIRYAMGDRIELWLNKLLCLDAASYVSR 490


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 402  RNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLS 512
            RN   HL S +D  G    V  + Y+P +     P+S
Sbjct: 1826 RNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPIS 1862


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 544 SLIWITNCRTSTTPVWSADST 606
           S+ +  NC T+ TP+W  D +
Sbjct: 168 SVTFCQNCATTNTPLWRRDES 188


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 135 DHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITN 272
           D+E+ K    +  G  + DL+ L+     NY+L ++PN++N    N
Sbjct: 184 DNEKDKTKESKAKGF-LDDLSGLSASSLHNYQLLKNPNVRNSTTQN 228


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 544 TNSPS*YRRASDKGQFFKSSPGTYSSSLTACFLPPRSSME 425
           T+S    RR S  G F   +    SS+ T+ +LP  S+ E
Sbjct: 183 TSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,229
Number of Sequences: 5004
Number of extensions: 49903
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)