Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14k02f
(634 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein. 87 4e-17
AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens ... 77 5e-14
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 33 0.64
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 33 0.64
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 33 0.64
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 33 0.64
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 33 0.64
>BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein.
Length = 226
Score = 87.4 bits (207), Expect = 4e-17
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Frame = +3
Query: 123 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 302
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 303 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 470
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 471 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH---SGLVSRQHMWMLSMVP 629
Y+PG + P+S LLY++G+ A LD LQ F+H S L +W L VP
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVP 182
>AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ44489 fis, clone UTERU2035114. ).
Length = 172
Score = 77.0 bits (181), Expect = 5e-14
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Frame = +3
Query: 123 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 302
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 303 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 470
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 471 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQ 569
Y+PG + P+S LLY++G+ A LD LQ
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQ 159
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 33.5 bits (73), Expect = 0.64
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 90 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 270 NHSPYGYVLKI 302
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.64
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 90 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 270 NHSPYGYVLKI 302
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.64
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 90 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 270 NHSPYGYVLKI 302
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 33.5 bits (73), Expect = 0.64
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 90 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 270 NHSPYGYVLKI 302
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.64
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 90 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 269
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 270 NHSPYGYVLKI 302
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,499,840
Number of Sequences: 237096
Number of extensions: 1957402
Number of successful extensions: 5035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5027
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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