Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14k02f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.26 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.26 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 144 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 275
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 236 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 144 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 275
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 326 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 116 GYPSDNRPRAGEAT 157
           GYP D +PRAG  T
Sbjct: 642 GYPFDRQPRAGVET 655


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 386 LSQASTEYIRSSTLHRGPGRQETRRKTAGVCTGRALEEL 502
           L + +++YI  STL     R++ ++ T G+   R+   L
Sbjct: 327 LKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSL 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/52 (15%), Positives = 26/52 (50%)
 Frame = +3

Query: 477 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPE 632
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P+
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPK 527


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 261 LITNHSPYGYVLKIMNSIDSQNVGVVEAQNE 353
           ++T  SPYGYV  I    +     +V  QNE
Sbjct: 318 ILTPVSPYGYVKPISPEQEELIHRLVYFQNE 348


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/52 (15%), Positives = 26/52 (50%)
 Frame = +3

Query: 477 VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPE 632
           V G+++ +  +S  ++   GE+    +N+     H+  ++   +  + ++P+
Sbjct: 476 VHGDVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPK 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,600
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)