Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j24f
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 31 0.18
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 28 1.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 28 1.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.3
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 26 5.2
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 5.2
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2... 25 6.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.9
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom... 25 9.1
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.1
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 526 LKENTQFRRHQVHFERFERSVSSASCHVREE 618
L++ F R H ERFER +S + HV+ E
Sbjct: 18 LRQCEDFHRLSTHIERFEREQASLNMHVKTE 48
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 256 SGKEHWSSHTGTSRWCTTPRRAGIGGVLSKKW-RWF 360
SG +H+ + WC+T + G+LS ++ +WF
Sbjct: 111 SGPKHYEYSLKSKTWCSTRDEGTLLGILSSEFSKWF 146
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 340 TERRQFLHVGEWCTTDLYLYVKTSAPSRFHPFFDNFLPV 224
T R FLH+ W DLY + SR FF NFL +
Sbjct: 1429 TFRPLFLHLHSWALEDLYETDPSGIVSR-QTFFYNFLTI 1466
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 318 TSGSGAPPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTHLKPAS 157
T+ + APPT ++P TH + T + T + VVPPT TH S
Sbjct: 104 TTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT-THANTTS 156
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 498 LTCLPSSRRPQRKYPISQASSSLRTI*AKRLKCFVPCPRRRH 623
L+ L +S QRK S S++ + + +K+L+ +P P H
Sbjct: 146 LSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHGHH 187
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 497 SQPESCWECGNIAQAISVPRRL 432
S P C+ CGN+A + V L
Sbjct: 256 SAPNYCYRCGNVASVMKVDESL 277
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 359 NQRHFFDRTPPIPARRGVVHHRLVP 285
N+ + +D+TP I AR+ H R++P
Sbjct: 99 NEGNEYDQTPDISARKRRKHFRMLP 123
>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 251 VKAGRSTGLHIQVQVGGAPLPDVQELAAFCQKNGVGSILTLPELYFKPS 397
+ A + L V VG + +++ CQ+N V + Y KPS
Sbjct: 39 IPAAETKDLGASVTVGNSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPS 87
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 601 TKHLRRFAQIVRSELDACEIGYFL 530
TK L R Q++ ELD CE G L
Sbjct: 503 TKDLARQVQVLLHELDLCENGIVL 526
>SPBC32F12.03c |gpx1||glutathione peroxidase
Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 320 QELAAFCQKNGVGSILTLPELYFKPSNVDELVSYV 424
+E+A FCQKN + L ++ NVD + ++
Sbjct: 76 EEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFL 110
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 288 YKSVVHHSPTCRNWRRSVKK 347
+KS+V C++WR +KK
Sbjct: 153 FKSIVQCMQVCKHWRDCIKK 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,272
Number of Sequences: 5004
Number of extensions: 64167
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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