Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j23f
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    27   0.53 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   0.70 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   1.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   2.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   2.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   2.8  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   3.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   3.8  
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    25   3.8  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    24   5.0  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    24   5.0  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    24   5.0  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    24   5.0  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   6.6  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    24   6.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    23   8.7  

>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +3

Query: 153 IVDNNNPGGVYVVDDNPGGVYVV----DDNPGGVHIVDDNPG 266
           IV++NN   +Y+V +  G VY V    DD+PGG+ I+ D  G
Sbjct: 11  IVEHNNSKDMYMVIN--GKVYDVSNFADDHPGGLDIMLDYAG 50


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIV 162
           +IYD +SSGI + DV    +  +   S+  +  ++ S   IV
Sbjct: 462 VIYDTSSSGIYIIDVTDQNVSFDSTYSASDVDAWLQSGATIV 503


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -3

Query: 272 NSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNS 93
           +SSG+     D   +I   +D +  I NY  S  I ++H   +  ++    DST ++  S
Sbjct: 312 HSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHG-HTDSVLCLTFDSTLLVSGS 370


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 45  KTKMAEERRLGSDGLPGVQDNPGGVYVADDNPGGVHI 155
           KTK+ +E     D L G    P G+   DD    +H+
Sbjct: 18  KTKVGDETEFTEDALRGSSLVPTGILNGDDECHALHM 54


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = -3

Query: 317 FFYDINRPFGIIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSG 138
           F+ +   P   +Y+ N +       ++ G   +   S  I ++ +   G ++ +     G
Sbjct: 363 FWIESEPPHANLYEYNGACKSFVHSEAGGSDTSQTVSEPISLDSMLLRGCVLRNTKWVIG 422

Query: 137 IIVRNIDSTRIILNSR*TI*SQPSFFRHFRF--FLNYTLSTDLCF 9
           ++V   D T+I+LNS      +    R+  +  +LN+ +   +CF
Sbjct: 423 VVVFTGDDTKIMLNSGAPPLKRSRITRNLNWNVYLNFIILFSMCF 467


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 156 VDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDN 260
           VD+  P  V+V+D + G +YV D N   + + +D+
Sbjct: 511 VDSITPP-VFVIDHSKGVIYVSDRNGNSLTLEEDS 544


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 87  LPGVQDNPGGVYVADDNPGGVHIVD 161
           LPG  D P G YV+  N     IV+
Sbjct: 400 LPGYSDQPSGSYVSSRNLTFARIVE 424


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 147 LLRDYRPQHRLHQDYLELPVNHLIP 73
           L  D  P HR H D++     HL P
Sbjct: 452 LFDDDNPIHRSHHDFIFTTEGHLFP 476


>SPBC11G11.06c |sme1||Sm snRNP core protein
          Sme1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 84

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 78 IPAVFLPPFSFFFKLYTVH*PM 13
          +  V +PP +F FKL   H P+
Sbjct: 5  VQKVMIPPINFIFKLLQQHTPV 26


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 174 GGVYVVDDNPGGVYVVD 224
           GG Y++  NP  +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  IGQWTVYNLKKNENGGRKTAGIRWFTG 94
           IGQW   ++KK E     T+  R FTG
Sbjct: 448 IGQWKRTDVKKGEKNSIVTSYNRNFTG 474


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = +3

Query: 204 GGVYVVDDNPG---GVHIVDDNPGGVH 275
           GG  V DD      GVH+V   PG VH
Sbjct: 123 GGTLVRDDMAALQAGVHVVVGTPGRVH 149


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = +3

Query: 102 DNPGGVYVADDNPGGVHI------VDNNNPGGVYVVDDNPGGVYVVDDNPGG 239
           +N   VY+ D      H+      V+N+  G  Y VD    G  V+D  PGG
Sbjct: 84  ENRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKYHVDTLLDGELVLDIYPGG 135


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 174 GGVYVVDDNPGGVYVVD 224
           GG Y++  NP  +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 174 GGVYVVDDNPGGVYVVD 224
           GG Y++  NP  +YVVD
Sbjct: 393 GGGYIMTSNPLNMYVVD 409


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 PGGVHIVDDNPGGVHIVDNTERA 299
           P   HI+D  PGG+  V +  RA
Sbjct: 489 PDVTHIIDFGPGGISGVGSLTRA 511


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 120 YVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 251
           Y +  NPG +++   +    V ++  +   V VVD +P G H++
Sbjct: 140 YNSPTNPGDIYLASLDTAIPVTLIHCHSSAVQVVDFHPRG-HLI 182


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 41  KKNENGGRKTAGIRWFTGSSR*SWW 115
           K + NG  K   IRW   SSR   W
Sbjct: 17  KLDRNGAVKLYRIRWLNYSSRSDTW 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,929
Number of Sequences: 5004
Number of extensions: 25412
Number of successful extensions: 115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)