Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j23f
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 36 0.005
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 30 0.32
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 0.43
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 0.43
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 0.43
AF077537-3|AAC26271.1| 186|Caenorhabditis elegans Hypothetical ... 29 0.56
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 0.75
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 0.75
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 1.3
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 1.3
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 1.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 1.3
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 28 1.3
AL110480-2|CAB60326.1| 244|Caenorhabditis elegans Hypothetical ... 28 1.7
AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical ... 28 1.7
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 27 3.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 3.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 27 3.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 3.0
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 27 4.0
Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical pr... 27 4.0
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 27 4.0
Z37092-4|CAA85455.1| 890|Caenorhabditis elegans Hypothetical pr... 26 5.3
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 26 5.3
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 26 5.3
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 5.3
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 26 5.3
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 5.3
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 26 5.3
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 26 5.3
Z96100-6|CAB76719.1| 222|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL033124-1|CAB76736.1| 222|Caenorhabditis elegans Hypothetical ... 26 7.0
AF077540-4|AAY55876.1| 111|Caenorhabditis elegans Hypothetical ... 26 7.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 25 9.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 25 9.2
U23529-4|AAK39164.2| 545|Caenorhabditis elegans Hypothetical pr... 25 9.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 25 9.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 25 9.2
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 25 9.2
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 25 9.2
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/61 (22%), Positives = 39/61 (63%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ ++DS ++++ D G+++ +DS +++ + D+ G+++ +DS ++++ T
Sbjct: 328 GVVLEELDSVELVMSVEDIIGVVLEELDSVELVMSVE-DTIGVVLEELDSVELVMSVEDT 386
Query: 83 I 81
I
Sbjct: 387 I 387
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ ++DS ++++ D+ G+++ +DS +++ + D+ G+++ ++S ++++ T
Sbjct: 348 GVVLEELDSVELVMSVEDTIGVVLEELDSVELVMSVE-DTIGVVLEELNSVELVMSVEDT 406
Query: 83 I 81
I
Sbjct: 407 I 407
Score = 35.1 bits (77), Expect = 0.011
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ +++S ++++ D+ G+++ +DS +++ D D+ G+++ ++S ++++ T
Sbjct: 28 GVVLEELNSVELVMSVEDTIGVVLEELDSVELVMSVD-DTIGVVLEELNSVELVISVEDT 86
Query: 83 I 81
I
Sbjct: 87 I 87
Score = 34.3 bits (75), Expect = 0.020
Identities = 13/61 (21%), Positives = 40/61 (65%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ ++DS ++++ D+ G+++ ++S +++ + D+ G+++ +DS ++++ T
Sbjct: 8 GVVLEELDSVELVMSVDDTIGVVLEELNSVELVMSVE-DTIGVVLEELDSVELVMSVDDT 66
Query: 83 I 81
I
Sbjct: 67 I 67
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/61 (22%), Positives = 38/61 (62%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ ++DS ++ + D+ G+++ +DS +++ + D+ G++ +DS ++++ T
Sbjct: 188 GVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVE-DTIGVVREKLDSVELVMSVEDT 246
Query: 83 I 81
I
Sbjct: 247 I 247
Score = 33.5 bits (73), Expect = 0.035
Identities = 12/61 (19%), Positives = 40/61 (65%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ +++S ++++ D+ G+++ ++S +++ + D+ G+++ +DS ++++ T
Sbjct: 388 GVVLEELNSVELVMSVEDTIGVVLEELNSVELVMSVE-DTIGVVLEELDSVELVMSVEYT 446
Query: 83 I 81
I
Sbjct: 447 I 447
Score = 33.5 bits (73), Expect = 0.035
Identities = 13/61 (21%), Positives = 39/61 (63%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILNSR*T 84
G+V+ ++DS ++++ + G+++ +DS +++ + D+ G+++ +DS ++++ T
Sbjct: 428 GVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVE-DTIGVVLEELDSVELVMSVEYT 486
Query: 83 I 81
I
Sbjct: 487 I 487
Score = 33.1 bits (72), Expect = 0.046
Identities = 16/78 (20%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 135
++ ++NS +V++ D+ G+++ +DS ++++ D+ G++ V+ D+ G+
Sbjct: 30 VLEELNSVELVMSVEDTIGVVLEELDSVELVMSVDDTIGVVLEELNSVELVISVEDTIGV 89
Query: 134 IVRNIDSTRIILNSR*TI 81
++ +DS ++++ TI
Sbjct: 90 LLEELDSVELVMSVEDTI 107
Score = 32.7 bits (71), Expect = 0.061
Identities = 11/56 (19%), Positives = 37/56 (66%)
Frame = -3
Query: 263 GIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTRIILN 96
G+V+ +++S ++++ D+ G+++ +DS +++ + D+ G++ +DS ++++
Sbjct: 268 GVVLEELNSVELVMSVEDTIGVVLEKLDSVELVMSVE-DTIGVVREKLDSVELVMS 322
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/73 (19%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 135
++ ++NS +V++ D+ G+++ +DS ++++ D+ G++ V+ D G+
Sbjct: 270 VLEELNSVELVMSVEDTIGVVLEKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGV 329
Query: 134 IVRNIDSTRIILN 96
++ +DS ++++
Sbjct: 330 VLEELDSVELVMS 342
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/63 (20%), Positives = 40/63 (63%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 108
++ +++S +V++ D G+++ +DS ++++ D+ G +V+ ++DS +++ D+
Sbjct: 330 VLEELDSVELVMSVEDIIGVVLEELDSVELVMSVEDTIG-VVLEELDSVELVMSVEDTIG 388
Query: 107 IIL 99
++L
Sbjct: 389 VVL 391
Score = 29.1 bits (62), Expect = 0.75
Identities = 12/63 (19%), Positives = 41/63 (65%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 108
++ +++S +V++ D+ G+++ +DS ++++ D+ G +V+ +++S +++ D+
Sbjct: 350 VLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEDTIG-VVLEELNSVELVMSVEDTIG 408
Query: 107 IIL 99
++L
Sbjct: 409 VVL 411
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/79 (20%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDS----------SG 138
++ ++NS +V++ D+ G+++ ++S ++++ D+ G +V+ ++DS G
Sbjct: 390 VLEELNSVELVMSVEDTIGVVLEELNSVELVMSVEDTIG-VVLEELDSVELVMSVEYTIG 448
Query: 137 IIVRNIDSTRIILNSR*TI 81
+++ +DS ++++ TI
Sbjct: 449 VLLEELDSVELVMSVEDTI 467
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/63 (19%), Positives = 41/63 (65%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDSTR 108
++ +++S +V++ D+ G+++ ++S ++++ D+ G +V+ ++DS +++ D+
Sbjct: 10 VLEELDSVELVMSVDDTIGVVLEELNSVELVMSVEDTIG-VVLEELDSVELVMSVDDTIG 68
Query: 107 IIL 99
++L
Sbjct: 69 VVL 71
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/78 (19%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Frame = -3
Query: 287 IIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGI 135
++ +++S +V + D+ G+++ +DS ++++ D+ G++ V+ D+ G+
Sbjct: 190 VLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGV 249
Query: 134 IVRNIDSTRIILNSR*TI 81
+ +DS ++++ TI
Sbjct: 250 VREKLDSVELVMSVEDTI 267
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/80 (20%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Frame = -3
Query: 290 GIIYD-VNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSS 141
G++ + ++S +V++ D+ G++ +DS ++++ D+ G++ V+ D+
Sbjct: 228 GVVREKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGVVLEELNSVELVMSVEDTI 287
Query: 140 GIIVRNIDSTRIILNSR*TI 81
G+++ +DS ++++ TI
Sbjct: 288 GVVLEKLDSVELVMSVEDTI 307
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = -3
Query: 278 DVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGII---------VVHDVDSSGIIVR 126
++NS +V++ D+ G++ +DS ++++ D+ G++ V+ D G+++
Sbjct: 133 ELNSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLE 192
Query: 125 NIDSTRIILNSR*TI 81
+DS ++ + TI
Sbjct: 193 ELDSVELVRSVEDTI 207
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/65 (21%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = -3
Query: 290 GIIYD-VNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRNIDS 114
G++ + ++S +V++ D G+++ +DS ++++ D G +V+ ++DS +++ D+
Sbjct: 308 GVVREKLDSVELVMSVEDIIGVVLEELDSVELVMSVEDIIG-VVLEELDSVELVMSVEDT 366
Query: 113 TRIIL 99
++L
Sbjct: 367 IGVVL 371
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.3 bits (65), Expect = 0.32
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 84 GLPGVQDNPGGVYVADDNP---GGVHIVDNNNPGGVYVVDDNPG-GVYVVDDNPGGVHIV 251
G G+ PGG D P GG+ VD GG VD PG G+ +D PGG +
Sbjct: 566 GSRGIDRPPGGDSRGVDRPPGGGGIPGVDRPPGGGRRGVDRPPGSGMPGIDRPPGGDRMG 625
Query: 252 DDNPGG 269
D G
Sbjct: 626 DKQRRG 631
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 63 ERRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGG 179
+R G G+PGV PGG D P G + + P G
Sbjct: 582 DRPPGGGGIPGVDRPPGGGRRGVDRPPGSGMPGIDRPPG 620
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG + N GG N GG
Sbjct: 102 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAGG 155
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGSGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 29.1 bits (62), Expect = 0.75
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 125
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + + N GG N GG N GG GG
Sbjct: 122 NAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGG 175
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 93 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 254
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 255 DNPGG 269
N GG
Sbjct: 111 GNAGG 115
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG + N GG N GG
Sbjct: 102 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAGG 155
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGSGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 29.1 bits (62), Expect = 0.75
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 125
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + + N GG N GG N GG GG
Sbjct: 122 NAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGG 175
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 93 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 254
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 255 DNPGG 269
N GG
Sbjct: 111 GNAGG 115
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG NNN G + + N GG N GG N GG
Sbjct: 42 NAGGTGFGSSNNGGSGFGGNNNVGPRF-GNGNAGGTGFGSGNAGGTGFGSGNAGG 95
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG + N GG
Sbjct: 92 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGGGNAGGTGFGSGNAGGTGLGSGNAGG 145
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG + N GG N GG N GG
Sbjct: 112 NAGGTGFGGGNAGGTGF-GSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGG 165
Score = 28.7 bits (61), Expect = 0.99
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 105 NPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
N GG N GG + N GG N GG N GG N GG
Sbjct: 72 NAGGTGFGSGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGGGNAGG 125
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 254
G G G N GG N GG + + N GG N GG N GG
Sbjct: 114 GGTGFGG--GNAGGTGFGSGNAGGTGL-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 170
Query: 255 DNPGG 269
GG
Sbjct: 171 GKAGG 175
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 93 GVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDDNPGG 269
G +N G + ++N G N N GG N GG N GG N GG
Sbjct: 49 GSSNNGGSGFGGNNNVGPRF--GNGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGNAGG 105
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 254
G G G +N G + N GG + N GG N GG N GG
Sbjct: 54 GGSGFGG--NNNVGPRFGNGNAGGTGF-GSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGS 110
Query: 255 DNPGG 269
N GG
Sbjct: 111 GNAGG 115
>AF077537-3|AAC26271.1| 186|Caenorhabditis elegans Hypothetical
protein F16G10.3 protein.
Length = 186
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 109 LVESMLRTIIPEESTSWTTIIPEEST*LTIIPEEST*LTIIPEESTSLTTIPEE 270
+V+ +RTI P+E+ +T+ PEES+ T+ P+++ + + + T+ ++
Sbjct: 17 VVDGCMRTIPPDEAYISSTLAPEESS-STMDPDDTVTAEVFLNKHNEVQTVDQD 69
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 144 GVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDD 257
GVH V G Y + D P G++ +D G+ +VDD
Sbjct: 2055 GVH-VPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 177 GVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHIVDN 287
GV+V G Y + D P G+ +D G+ +VD+
Sbjct: 2055 GVHVPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 144 GVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVDD 257
GVH V G Y + D P G++ +D G+ +VDD
Sbjct: 2055 GVH-VPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 177 GVYVVDDNPGGVYVVDDNPGGVHIVDDNPGGVHIVDN 287
GV+V G Y + D P G+ +D G+ +VD+
Sbjct: 2055 GVHVPYGTAGDCYSMKDCPQGIFSIDLKSAGLKLVDD 2091
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 72 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 251
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3191 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3249
Query: 252 DD 257
DD
Sbjct: 3250 DD 3251
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 72 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 251
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3236 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3294
Query: 252 DD 257
DD
Sbjct: 3295 DD 3296
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
protein F44E2.4 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 112 VESMLRTIIPEESTSWTTIIPEEST*LTII----PEEST*LTIIPEESTSLTTIPEE 270
+ S +R + PE+ S TT+I +E+T T ++ T EEST+ T EE
Sbjct: 221 IVSAIRCVTPEQHASSTTLIVDETTESTSASAEDDDDDVLTTNTSEESTATTAHDEE 277
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 72 LGSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 251
L DG P DN G + + + + G V + NP G + D+ G +
Sbjct: 3236 LSKDGSPLPTDNNGNYVLVPTDESTTKALPTDESGNVVIPITNPDGTSLATDSTGS-FVT 3294
Query: 252 DD 257
DD
Sbjct: 3295 DD 3296
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 130 TIIPEESTSWTTIIPEEST*LTIIPEEST*LTIIPEESTSLTTIPEEFTS*IIP 291
T +PE ST T+++ +ST T P + T +PE STSL T T+ +IP
Sbjct: 221 TTVPESST--TSVV--QST-TTAEPTSTITSTTVPESSTSLLTSTLASTTTLIP 269
>AL110480-2|CAB60326.1| 244|Caenorhabditis elegans Hypothetical
protein Y24F12A.3 protein.
Length = 244
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 47 NENGGRKTAGIRWFTGSSR*SWWSLCCGR*SRRSPHRGQQ 166
N NG R G+ W R W + GR RR RG++
Sbjct: 121 NHNGSRWNDGLEWNNRDQRTGWIEMADGR-RRRRRRRGRR 159
>AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical
protein W09B6.3 protein.
Length = 578
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 221 NYVDSSGIIVNYVDSSGIIVVHDV-DSSGI 135
NY SSG+I+ Y + +G ++ + D SGI
Sbjct: 35 NYSSSSGVIICYSNGTGEVITQEAFDDSGI 64
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 314 FYDI-NRPFGIIYDVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSS 174
FY++ + ++ +++ ++ VDS+G I+ +V++ IIV ++S
Sbjct: 39 FYNVADNLDSLLQPIDAPANIIAQVDSNGKIIGFVENERIIVGSANTS 86
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 257 VVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIV 162
++ +D+ I+ VDS+G I+ +V++ IIV
Sbjct: 49 LLQPIDAPANIIAQVDSNGKIIGFVENERIIV 80
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 248
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 225 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 280
Query: 249 VDDN---PGGVHIVDNTER 296
GGV D T R
Sbjct: 281 CPKYCAIDGGVFFEDGTRR 299
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 248
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 224 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 279
Query: 249 VDDN---PGGVHIVDNTER 296
GGV D T R
Sbjct: 280 CPKYCAIDGGVFFEDGTRR 298
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPG--GVYVVDDNPGGVHI 248
G G PG PG AD +PG N P G D NPG G +PG I
Sbjct: 225 GPQGPPGSPGQPG----ADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGERGI 280
Query: 249 VDDN---PGGVHIVDNTER 296
GGV D T R
Sbjct: 281 CPKYCAIDGGVFFEDGTRR 299
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/64 (31%), Positives = 22/64 (34%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIVD 254
G DG PG PG PG V P G+ D PG P G D
Sbjct: 240 GQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGPPGDD 299
Query: 255 DNPG 266
+PG
Sbjct: 300 GHPG 303
>Z30215-4|CAA82936.1| 541|Caenorhabditis elegans Hypothetical
protein F40F12.4 protein.
Length = 541
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 114 GVYVADDNPGGVHIVDNNNPGGVYV-VDDN---PGGVYVVDDNPGGVHIVDDNPGGVHIV 281
G V D HI++ N+PG V++ + + P +Y++ D+ D+ GG I+
Sbjct: 179 GCQVGDGEIRFNHIIEKNDPGPVFINIPEQGPVPFQIYIIADH--FTFNSDNLKGGFAII 236
Query: 282 DNTE 293
D+ E
Sbjct: 237 DSIE 240
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = +3
Query: 78 SDGLPGVQDNPG--GVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGGVHIV 251
S G PG PG G +D PG P G VD PG P G
Sbjct: 200 STGTPGAAGAPGPQGPVGSDGQPGSAGAPGAPGPAGAPGVDGQPGA--NGQPGPDGEQGH 257
Query: 252 DDNPG 266
D PG
Sbjct: 258 DGQPG 262
>Z37092-4|CAA85455.1| 890|Caenorhabditis elegans Hypothetical
protein F44F4.4 protein.
Length = 890
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 240 VHIVDDNPGGVHIVDNTERAINIVEK 317
VH++ +NPG + N ER + + EK
Sbjct: 530 VHVIVNNPGDLTNDSNVERLVELKEK 555
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 84 GLPGVQDNPGGVYVADDNPGGVHIVDNNNP 173
G PG+Q NPGG PGGVH + N P
Sbjct: 1804 GHPGLQ-NPGG------RPGGVHGMGQNQP 1826
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 84 GLPGVQDNPGGVYVADDNPGGVHIVDNNNP 173
G PG+Q NPGG PGGVH + N P
Sbjct: 1793 GHPGLQ-NPGG------RPGGVHGMGQNQP 1815
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGG 239
G+DG PG PG V PG P G NPG + P G
Sbjct: 213 GTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPG---PAGNPGSAGASEPGPAG 264
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 26.2 bits (55), Expect = 5.3
Identities = 31/87 (35%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Frame = +3
Query: 66 RRLGSDGLPGVQDNPGGVYVADDNPGGVHIVDN-NNPGGVYVVDDNPGGVYVVDDNPGGV 242
R G G PG NPGG PGG NPGG+ NPGG PGG
Sbjct: 92 RYSGGLGTPGGPGNPGGP-GGLGTPGGPGTPGGPGNPGGL-GGPGNPGG----PGTPGGP 145
Query: 243 HIVDDNPGG-------VHIVDNTERAI 302
P G V IV N +R I
Sbjct: 146 GTPGGQPHGTAGGTYYVIIVQNGQRVI 172
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPGG 239
G+DG PG PG V PG P G NPG + P G
Sbjct: 223 GTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPG---PAGNPGSAGASEPGPAG 274
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 195 DNPGGVYVVDDNPGGVHIVDDNPGGVHIVDNTERAINIVEKK 320
D GGV+ V NPG + + P + + + + A+N E K
Sbjct: 20 DKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGGVHIVDNNNPGGVYVVDDNPGGVYVVDDNPG--GVHI 248
G DGL G +PG +N GG I P G D G D PG G +
Sbjct: 110 GPDGLDGPDGHPGYAAAIKENFGGACISCPAGPAGP-PGPDGCAGEPGTDGAPGEDGQNG 168
Query: 249 VDDNPGG 269
+PGG
Sbjct: 169 APGSPGG 175
>Z96100-6|CAB76719.1| 222|Caenorhabditis elegans Hypothetical
protein VH15N14R.1 protein.
Length = 222
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 47 NENGGRKTAGIRWFTGSSR*SWWSLCCGR*SRRSPHR 157
N NG R G+ W R W + GR RR R
Sbjct: 121 NHNGLRWNDGLEWNNRDQRTGWIKMADGRRRRRRRRR 157
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 111 GGVYVADDNPGGVHIVDNNNPGGVY--VVDDNPGGVYV 218
G +Y +N G H++D G +Y + PGG V
Sbjct: 634 GAIYCTTEN-GNFHVIDPKTYGSIYSHAISKIPGGTSV 670
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 111 GGVYVADDNPGGVHIVDNNNPGGVY--VVDDNPGGVYV 218
G +Y +N G H++D G +Y + PGG V
Sbjct: 634 GAIYCTTEN-GNFHVIDPKTYGSIYSHAISKIPGGTSV 670
>Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical
protein C27C7.3 protein.
Length = 316
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 162 CPRCGLLRDYRPQHRLHQDYLELPVNHLIPAVFL 61
C R G+ RD +HR HQ+ P +IP + L
Sbjct: 70 CVRAGMRRDNVRKHRTHQNQAATP-GAVIPELHL 102
>AL033124-1|CAB76736.1| 222|Caenorhabditis elegans Hypothetical
protein VH15N14R.1 protein.
Length = 222
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 47 NENGGRKTAGIRWFTGSSR*SWWSLCCGR*SRRSPHR 157
N NG R G+ W R W + GR RR R
Sbjct: 121 NHNGLRWNDGLEWNNRDQRTGWIKMADGRRRRRRRRR 157
>AF077540-4|AAY55876.1| 111|Caenorhabditis elegans Hypothetical
protein T07H3.7 protein.
Length = 111
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 97 FKIILVESMLRTIIPEESTSWTTIIPEEST 186
F L E+ +RTI P+E +T+ PE+ T
Sbjct: 12 FLTTLAETCMRTIPPDEVYITSTLPPEQDT 41
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGG 146
G+ G PG NPGG A PGG
Sbjct: 253 GAAGAPGADGNPGGPGTA-GKPGG 275
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 106 ILVESMLRTIIPEESTSWTTIIPEEST*LTIIPEES 213
I+V+ T I E +SW I+ E + PE+S
Sbjct: 131 IIVDDQFGTYISERISSWRKILAESREVVLSYPEDS 166
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 126 QHRLHQDYLELPVNHLIPA 70
Q +L++D EL V HL+P+
Sbjct: 139 QRKLYEDVAELSVGHLLPS 157
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGG 146
G+ G PG NPGG A PGG
Sbjct: 253 GAAGAPGADGNPGGPGTA-GKPGG 275
>U23529-4|AAK39164.2| 545|Caenorhabditis elegans Hypothetical
protein C15B12.4 protein.
Length = 545
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 278 DVNSSGIVVNDVDSSGIIVNYVDSSGIIVNYVDSSGIIVVHDVDSSGIIVRN 123
++ SG N + S + VD SGI+ S+G + HD +S + N
Sbjct: 347 NIRGSGSDTNSLASQSV-ETAVDPSGIVKIISKSNGSSISHDNQNSSLTFNN 397
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGG 146
G+ G PG NPGG A PGG
Sbjct: 253 GAAGAPGADGNPGGPGTA-GKPGG 275
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 GSDGLPGVQDNPGGVYVADDNPGG 146
G+ G PG NPGG A PGG
Sbjct: 253 GAAGAPGADGNPGGPGTA-GKPGG 275
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 126 QHRLHQDYLELPVNHLIPA 70
Q +L++D EL V HL+P+
Sbjct: 139 QRKLYEDVAELSVGHLLPS 157
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 129 DDNPGGVHIVDNNNPGGVYVVD-DNPGGVYVVDDNPGGVHIVDDNPGGVHIVDNTERAIN 305
DD P VH+ D+ V D +NP + + DD V +D P +N E N
Sbjct: 5 DDEPAVVHLSDDEEHAVAPVEDSENPDVIQLDDD----VIPEEDVPDDEETAENLENLEN 60
Query: 306 IVE 314
+++
Sbjct: 61 VLD 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,105,253
Number of Sequences: 27780
Number of extensions: 152934
Number of successful extensions: 877
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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