Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j17f
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 30 0.25
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 28 1.0
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 27 2.3
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.3
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 5.4
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.2
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.2
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 9.5
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 9.5
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 25 9.5
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 9.5
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 394 PFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSI 549
P + + + ++K+RNL + R DT +++ E+ M + + + K+YSI
Sbjct: 45 PVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSI 96
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 322 SLRRSGAFHVAIAAHVHGVPSPGQLLIR-NQARVVECVVL 206
+L R AF + + VH P PG +L+R NQA + + V+L
Sbjct: 325 NLFRFLAFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = -3
Query: 248 PHQEPGPGCGMRGSY*TLIRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIV 69
P EPG M G + P C + T+ + H+T + + H +LN ++
Sbjct: 329 PANEPGSSI-MPGK----VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLA 383
Query: 68 SN 63
N
Sbjct: 384 KN 385
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 337 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 498
V +L +E+D+ Q + P + + EN+K + + +G + NP +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 388 APPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSIQQYG*F 567
APP + + S + +QS+T+ N + +NRM + KL ++ Y
Sbjct: 218 APPSASSQLNSSNPSSPFRPLSASTDKQSNTSLNRVLGKNRMPETQTTKKLDNVGLYNMQ 277
Query: 568 SNYLEHQEL-TSFFLPLV 618
+ +E Q++ LP++
Sbjct: 278 NQTMEDQDMQAESLLPII 295
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 170 STLRLMEATLAHST-TAITNTTSHAQLNTLTIMIVSNSIVLNDRSHV 33
ST M T++H+T T+ + TTSH NTL ++ + + S V
Sbjct: 3716 STGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGV 3762
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 239 EPGPGCGMRGSY*TLIRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLT 81
EPG C G Y + PV S+ ++ A STT+ T+++S TLT
Sbjct: 88 EPGSECIYNGPYYSQCIPVDIDPSS---SSSSAASSTTSTTSSSSLVSSTTLT 137
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 144 GRLHQAESRRHAGHRTDEGSIRTTHSTTRAWFLMRSCPGEGTPCTWAAMAT 296
G L A + RH HR D+ + T + T + + PG + ++ + +T
Sbjct: 17 GALPYAPNHRH--HRRDDDGVLTVYETILETVYVTAVPGANSSSSYTSYST 65
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 312 GLALSTSPSLPTYMEYPRLDNSSSGTRPGLWNAWFLLNP 196
G ALS Y LD SS+G G W W ++ P
Sbjct: 686 GEALSLREDKDCYTMSLLLDVSSTGKIRGTWIGWAVIRP 724
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 185 PDG*GFNKNHAFHNPGLVPDEELSRRGYSMYVGSDGD 295
P G G K + P ++P +E +++GY+ + GD
Sbjct: 202 PGGTGHYKLGGNYAPSVLPQKEAAKKGYAQILWLYGD 238
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 339 RRVN*RD--RPEAAEAVDRPAFPAAKHRRKQEEEQEPLQ 449
+RVN R RPE E ++RP + K+ + +PL+
Sbjct: 489 QRVNMRSFLRPERMEVIERPKKVSKTSNTKETDTMKPLR 527
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +1
Query: 349 TREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSL 522
T ++ ++ +TA L+ E ++ ++ + + PN I EN +KSL
Sbjct: 434 TEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSL 491
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 GQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN-GRQSD 477
G +E++ + R Q ST P L S+E N + +NP + G Q+D
Sbjct: 302 GSDEQEVSSMMGNRWQHSST-PASLFNSVERNNSLTAVAHNPPGSIGWQTD 351
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 309 LALSTSPSLPTYM---EYPRLDNSSSGTRPGL 223
L +STS + PTY+ E R ++ SGT P +
Sbjct: 131 LVISTSNTAPTYISMIESSRASSTHSGTAPSI 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,815
Number of Sequences: 5004
Number of extensions: 64214
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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