Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j17f
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.27 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.48 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 201 NPHPSGGLHVVYSPPDGGDPRAQHHCHHEHNQPCAAEHAHY 79
           +PH   G H +   P  G P      HH H+Q  + +H HY
Sbjct: 333 SPHHQHGNHTM--GPTMGPPH-----HHHHHQTQSLQHLHY 366


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 391 PPFLLQSIEENKKKSRNLYNPTANGRQSDTNP 486
           PP  ++  EE KKK++   +P+ N  + +  P
Sbjct: 530 PPSSMKETEEEKKKTKQSLSPSENQSKMEILP 561


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 76  IIVSVFSCAWLVVFVMAVV 132
           II+S F   WL  FV+A+V
Sbjct: 376 IIMSAFIVCWLPFFVLALV 394


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 328 GQFVEELT--REIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDT 480
           G    ELT  +EI  RQ+R+S   P+L     EN  K   +Y     GR SD+
Sbjct: 449 GFLAGELTYSQEIGDRQERESELVPYL-----EN--KGNGVYAWIGAGRDSDS 494


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 70  TIIIVSVFSCAWLVVFVMAV 129
           T+II++VF   W   +VM++
Sbjct: 262 TVIIIAVFFICWTPYYVMSL 281


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 76  IIVSVFSCAWLVVFVMAVVL 135
           +I+ VF   WL  F+M V++
Sbjct: 331 VIMGVFVVCWLPFFLMYVIV 350


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 76  IIVSVFSCAWLVVFVMAVVL 135
           +I+ VF   WL  F+M V++
Sbjct: 331 VIMGVFVVCWLPFFLMYVIV 350


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 76  IIVSVFSCAWLVVFVMAVVL 135
           +I+ VF   WL  F+M V++
Sbjct: 331 VIMGVFVVCWLPFFLMYVIV 350


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -2

Query: 501 LVNKIGISIALASICG 454
           +++K+ + +ALA+ICG
Sbjct: 1   MLSKVVLLVALAAICG 16


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -2

Query: 501 LVNKIGISIALASICG 454
           +++K+ + +ALA+ICG
Sbjct: 1   MLSKVVLLVALAAICG 16


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 251 TPHQEPGPG 225
           TP +EPGPG
Sbjct: 21  TPKEEPGPG 29


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 251 TPHQEPGPG 225
           TP +EPGPG
Sbjct: 21  TPKEEPGPG 29


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 251 TPHQEPGPG 225
           TP +EPGPG
Sbjct: 21  TPKEEPGPG 29


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 192 PSGGLHVVYSPPDGGD-PRAQHHCHHEHNQPCAAEHAHY 79
           PS  L  + SPP+  D P  Q H HH H+     + + Y
Sbjct: 51  PSTHLMDLSSPPEHRDLPIYQSH-HHLHHHQVLYQQSPY 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 331  QFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN 462
            +F+E  T  I       S     ++  + E+KKK++  +N  +N
Sbjct: 1468 RFIEVATNSITLHLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSN 1511



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -2

Query: 198  PHPSGGLHVVYSPPDGGDPRAQHH 127
            PHP  G      PP G    A  H
Sbjct: 1749 PHPGNGHSGTMGPPVGHPTNASAH 1772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,207
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 26
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)