Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j16f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    48   1e-06
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    30   0.20 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   2.5  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   2.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.4  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   5.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
 Frame = +1

Query: 280 DCLSLNIYVPTNATSQNKLPVMVWIHGGAFSSGSGSR-DSAGPEFL----IRYDVILVTV 444
           DCL LNI+VP         PV+ +IHGG    G+        P+ L         ILV+ 
Sbjct: 81  DCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVSP 140

Query: 445 YYRLGPYGFMC----LDHPEVAGNQGLKDQLMALRWINENIEAF 564
            +RL  +GF+     L+    + N G  DQ + L W  ++IE+F
Sbjct: 141 GHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESF 184


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 298 IYVPTNATSQNKLPVMVWIHGGAFSSGS-GSRDSAGPEFLIRYDVILVTVYYRLGP 462
           I+ P     +   P  +W HGG +  G+  + +S       +   ++V V YRL P
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAP 143


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 401 PALSLLPDPLENAPP*IQTITGNLF*DVAFV 309
           P   +LPDP +  PP IQT++ +LF ++  V
Sbjct: 271 PIWLILPDPTQKIPPLIQTLS-SLFSELCSV 300


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 155 EHHKIHERPRCPSHTQVS*THLKPSKNPQDAHKRAHHQTN 274
           EH         PSH+  S  HL  + NP  +    H  T+
Sbjct: 530 EHSTSSSSGISPSHSSASLAHLSQASNPNGSSSAPHRPTS 569


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 172  MDFVMLRDFFEDNYLCGVNFDRYFSC 95
            M+F +L   F+DN L GV + R  SC
Sbjct: 1728 MNFFLLLMDFKDNDLVGVGYLRILSC 1753


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 PRCPQASTSSNQSLDCLSLNIYVPTNATSQNKLPVMVW 351
           PR    S+SSN S++ +S     PT    Q ++  +++
Sbjct: 110 PRLTNVSSSSNLSMNTISSTALTPTEKILQKRIEDLLY 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,410
Number of Sequences: 5004
Number of extensions: 51387
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)