Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j13f
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    29   0.76 
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   3.1  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   4.0  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   4.0  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   5.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   5.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   9.3  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 206 ITVRLRHVAEDFDMVYKAFPEDRFTGRFDLLRPTVIIKDLDLIKQITIKDFEHFL 370
           I   L  VAED  M+  +  +D  TGR  + RP  I   + +I   T+   E  L
Sbjct: 87  IIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVPAIERIL 141


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 70  EHDHFNLVGCTSGDT 114
           E DH  +VG TSGDT
Sbjct: 143 ERDHLTVVGATSGDT 157


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 461 TACLSILDLSKKIGFCQ---RTGQRCHQPKL 378
           T C+S++ ++ +IG CQ     G+ C Q K+
Sbjct: 239 TVCVSVMAVNNEIGVCQPLEEIGKICRQKKV 269


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 294 KSNLPVNLSSGKALYTISKSSATC 223
           K+NLPV+  S    +TI K + +C
Sbjct: 94  KNNLPVDTESSSEAFTIEKDNNSC 117


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -3

Query: 532 VINFHHKRDHSTHLGAGESRTQRGPHVFPFLTSQRK*VSAKERVSGVI---NQSSVVQEM 362
           + +F+ KR HSTH G   S  +   +V P    ++K  +     S  I    Q    +EM
Sbjct: 54  ISDFNQKRFHSTHSGNSPSIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEM 113

Query: 361 LKV 353
            KV
Sbjct: 114 YKV 116


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 299 RPTVIIKDLDLIKQITIKDFEHFLD 373
           RPT++  D  L+ +++ +D ++FLD
Sbjct: 491 RPTLVFLDAGLVTKLSTQDQKNFLD 515


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 461 STLSPAFTSSKMRGMVPFMVEVNNQMIDMIK 553
           S+ SP+F SSK  G +P + +  + +I+M++
Sbjct: 210 SSPSPSFASSKDAGTIPAIQKKKSLLIEMME 240


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 158 GVNHFTPIPVLGNAGPITVRLRHVAEDFDMVYKAFPEDRFTGRFDLLRPTVIIKDLDLIK 337
           G++ F    +LG +  ITV+     +++  V K   +        + + + IIK+LDL+K
Sbjct: 261 GMSSFLIPSLLGVSPGITVKFLSRLQNYPNVSKDARDAACLYALKIAKDSKIIKNLDLVK 320

Query: 338 Q 340
           +
Sbjct: 321 E 321


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 27/88 (30%), Positives = 36/88 (40%)
 Frame = +2

Query: 305 TVIIKDLDLIKQITIKDFEHFLDHRALVDDTADPFFGRNLFSLRGQEWKDMRSTLSPAFT 484
           T II+ LD IK +TIKD    L    L      P F R +  +  Q  +     L     
Sbjct: 525 TFIIEYLDHIKGLTIKDKIKLLGCPVLKHSKYAPLFIREIGCVIAQGKRLQIYDLKSVPL 584

Query: 485 SSKMRGMVPFMVEVNNQMIDMIKKKIVA 568
               RG +P   E   Q ++ + K IVA
Sbjct: 585 EILERG-IP-TTETELQQLEQLHKLIVA 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,510
Number of Sequences: 5004
Number of extensions: 53420
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)