Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j07f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    28   0.93 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   3.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.6  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   8.6  

>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 304 KKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGI 483
           K+     K+R +++   V KLK EN+ L++ ++ +  +L   +D      +K   + E +
Sbjct: 122 KQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESV 181


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 319 KSKQRTQETFSRVSKLKAENQVLE---EKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDL 489
           ++K+   E F++   L+ +N+  +   EK+K  +K+L   +  F ++ +K   E+  +  
Sbjct: 168 RTKRHFSELFTQKQMLQLQNENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKE 227

Query: 490 NKLFED 507
           +  F+D
Sbjct: 228 SDSFKD 233


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 349 SRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNKLFE 504
           S   KL+  ++  +      SK+++  +  + ++ KKD + +   DLNK FE
Sbjct: 514 SEEKKLEVSDEAPKAAPLAESKKVEEKEPFYVSKDKKDISAVNLADLNKRFE 565


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 352 RVSKLKAENQVLE--EKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNK 495
           +VS L+ ++ +++  E++  LS + +FL ++       + ++L+G DLNK
Sbjct: 400 KVSLLRIKSIIVQFSERIVFLSLEYKFLTNIQPELNDAEKSQLDGFDLNK 449


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 565 IISLTLLNTIYHLCPYRLVSLQRACLSRYLPIRW 464
           +++L LL  I+H   Y    +    LS Y P  W
Sbjct: 161 LLNLLLLPPIFHFYSYPFFFVDHPPLSSYSPFLW 194


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 358 SKLK-AENQVLEEKVKTLSKQ-LQFLKDLFFAQAKKDTTELEGIDLNKLFEDLPDDRDTN 531
           +K+K  EN++LE + +TLSKQ L  +  +F    KK +  L  ++       L    DT 
Sbjct: 464 NKIKYLENELLEREKRTLSKQELDGITKVFRHFEKKKSNMLNEVEFYAALASLGLVYDTE 523

Query: 532 D 534
           +
Sbjct: 524 E 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,021
Number of Sequences: 5004
Number of extensions: 34180
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)