Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j07f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 31 0.95
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941... 29 2.2
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 2.9
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 28 5.1
07_03_0775 - 21413522-21413797,21414016-21414178,21414274-214143... 28 6.7
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 27 8.9
04_03_0297 + 14060687-14060787,14061341-14061473,14061566-140617... 27 8.9
04_03_0029 - 9714031-9714072,9714196-9714219,9714343-9714406,971... 27 8.9
03_05_0906 + 28671977-28672111,28672197-28672253,28672678-286728... 27 8.9
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 301 VKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEG 480
VK K F R+ +EN+ L ++ QF+ + F+ KD + ++
Sbjct: 710 VKSEVCKEAGYASSLFQRLMHSSSENKRLTKQYMMDPSISQFVSENFYEGRLKDDSTVKS 769
Query: 481 IDLNKLFEDLP 513
D NKL ++ P
Sbjct: 770 DDYNKLLKEFP 780
>01_06_0133 -
26793335-26793380,26793696-26793907,26794009-26794134,
26794258-26794335,26794857-26795014,26795230-26795278,
26795369-26795414,26795527-26795654,26796154-26796237,
26796317-26796409,26796505-26796549,26796792-26796851
Length = 374
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 432
E+ ++SR + + T+E +V L AEN L ++ L++ + L+
Sbjct: 237 ESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLR 282
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 529 LCPYRLVSLQRACLSRYLPIRWCLSLLEQKTSLSGTEVVLIKFLLSPRAL 380
LC +L S+ +CL L + + S + + G VL++ +LS +A+
Sbjct: 444 LCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQAILSIKAI 493
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 304 KKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 432
+ S +K+R E S +SKL EN+V ++ + L +L+ L+
Sbjct: 163 RSSAEPTKERPTEPSSMISKLNEENRVAIQQNQKLRHELELLR 205
>07_03_0775 -
21413522-21413797,21414016-21414178,21414274-21414351,
21415983-21416176
Length = 236
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 340 ETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
E S KLK N+ L+EK+K L + L+D
Sbjct: 122 ELRSEAQKLKESNESLQEKIKELKAEKNELRD 153
>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 577 LSVCIISLTLLNTIYHLCPYRLVSLQRACLSRYLPIRWCLSLLEQKTSLSGTEVVLIKFL 398
L++ + SL L+ + LC + ++ A + LP RW LL+ SL + +K L
Sbjct: 1398 LTIDLPSLLLVEPLKSLCHTEHLEIEDASQMKSLPDRW---LLQNSASLKSLHIRKVKSL 1454
Query: 397 LS 392
S
Sbjct: 1455 ES 1456
>04_03_0297 +
14060687-14060787,14061341-14061473,14061566-14061720,
14061850-14062042,14062130-14062248,14062332-14062548,
14062670-14062765,14062908-14063084,14063175-14063291,
14063398-14063564,14063680-14063904,14064052-14064373,
14064624-14064868,14065227-14065290,14065414-14065437,
14065561-14065602
Length = 798
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQ 423
+A+++SR++ K+ Q S+ +L Q++EE K+L +++
Sbjct: 19 DALRQSRYQMKRCFQRYVSKGKRLLKNQQLMEELEKSLDDKVE 61
>04_03_0029 -
9714031-9714072,9714196-9714219,9714343-9714406,
9714763-9715007,9715258-9715579,9715727-9715951,
9716067-9716233,9716340-9716456,9716547-9716723,
9716866-9716961,9717083-9717299,9717385-9717503,
9717591-9717783,9717913-9718067,9718160-9718292,
9718846-9718946
Length = 798
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQ 423
+A+++SR++ K+ Q S+ +L Q++EE K+L +++
Sbjct: 19 DALRQSRYQMKRCFQRYVSKGKRLLKNQQLMEELEKSLDDKVE 61
>03_05_0906 +
28671977-28672111,28672197-28672253,28672678-28672854,
28672935-28673021,28675339-28675403,28676914-28677010,
28677162-28677248
Length = 234
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 331 RTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNKLFEDL 510
RT E ++S + + K+KTLS+ + L + AQ T E D LF D
Sbjct: 45 RTAEEREKLSAISRRISAAKAKIKTLSQSEEPLTIVSPAQHPSSCTNQE--DFRPLFHDK 102
Query: 511 PDD 519
DD
Sbjct: 103 YDD 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,646
Number of Sequences: 37544
Number of extensions: 186010
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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