Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j07f
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000262-5|AAN60522.1| 100|Caenorhabditis elegans Hypothetical ... 60 2e-09
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 32 0.37
U12965-1|AAA20611.1| 176|Caenorhabditis elegans Hypothetical pr... 32 0.37
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 31 0.65
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 31 0.65
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 31 0.65
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 31 0.65
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 31 0.65
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 31 0.65
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 31 0.65
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 31 0.65
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 31 0.65
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 31 0.65
AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical ... 31 0.86
Z81557-7|CAB04538.1| 421|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 4.6
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 4.6
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 4.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical ... 28 6.0
DQ231945-1|ABB69435.1| 51|Caenorhabditis elegans hypothetical ... 27 8.0
AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF000262-5|AAN60522.1| 100|Caenorhabditis elegans Hypothetical
protein C48E7.11 protein.
Length = 100
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKD 462
EAV ++R K +Q +T +V +LK EN+ LE KV+ L K+L FLK++F A AK D
Sbjct: 29 EAVNRTRQKKRQEENDTAEKVDELKKENETLERKVEQLQKELSFLKEMFMAYAKND 84
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 298 AVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELE 477
A+ K R K TQE ++ K E + E+ K + K ++ K+ + K+ T
Sbjct: 2188 ALSKERRKENNETQEEEEQIQKRVEEFKESTEEQK-IQKSIELTKEECTSDEKELKTYSG 2246
Query: 478 GIDLNKLFEDLPDDRDTNDK 537
IDL+K+F + ND+
Sbjct: 2247 SIDLDKVFIQGSSKKPRNDE 2266
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 298 AVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELE 477
A+ K R K TQE ++ K E + E+ K + K ++ K+ + K+ T
Sbjct: 2188 ALSKERRKENNETQEEEEQIQKRVEEFKESTEEQK-IQKSIELTKEECTSDEKELKTYSG 2246
Query: 478 GIDLNKLFEDLPDDRDTNDK 537
IDL+K+F + ND+
Sbjct: 2247 SIDLDKVFIQGSSKKPRNDE 2266
>U12965-1|AAA20611.1| 176|Caenorhabditis elegans Hypothetical
protein F23F12.9a protein.
Length = 176
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQL 420
EA KKSR K R Q+ + LK +N LEE++K +L
Sbjct: 77 EAAKKSRASRKHREQKNQTENELLKRKNAALEEELKQAKCEL 118
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 257 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 302
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 282 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 327
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 265 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 310
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 278 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 323
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 276 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 321
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 31.1 bits (67), Expect = 0.65
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTL-SKQLQFLKDLFFA-QAKKDTT 468
E KK+ + R E + K+K +N++LE+ + +L SK + L A Q +
Sbjct: 170 EVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
Query: 469 ELEGIDLNKLFEDLPD 516
LE L+ +DL D
Sbjct: 230 GLENEQLSIAMKDLAD 245
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.65
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTL-SKQLQFLKDLFFA-QAKKDTT 468
E KK+ + R E + K+K +N++LE+ + +L SK + L A Q +
Sbjct: 170 EVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
Query: 469 ELEGIDLNKLFEDLPD 516
LE L+ +DL D
Sbjct: 230 GLENEQLSIAMKDLAD 245
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 31.1 bits (67), Expect = 0.65
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTL-SKQLQFLKDLFFA-QAKKDTT 468
E KK+ + R E + K+K +N++LE+ + +L SK + L A Q +
Sbjct: 170 EVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSLESKNKDIQRKLEIAKQTVEQKD 229
Query: 469 ELEGIDLNKLFEDLPD 516
LE L+ +DL D
Sbjct: 230 GLENEQLSIAMKDLAD 245
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 276 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 321
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKD 435
EA K+ R K K+ + +RVS L+ +N+ L E++KTL K+L K+
Sbjct: 257 EAAKECRRKKKEYVKCLENRVSVLENQNKALIEELKTL-KELYCRKE 302
>AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical
protein Y51H4A.4 protein.
Length = 185
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQ 450
EA +KSR K+ Q+ RV+ L+ ENQ L V+ L Q + ++ Q
Sbjct: 115 EAARKSRESRKKVDQDNSVRVTYLERENQCLRVYVQQLQLQNESMRQHLLLQ 166
>Z81557-7|CAB04538.1| 421|Caenorhabditis elegans Hypothetical
protein F59A1.13 protein.
Length = 421
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 191 KTIFTICLLLKEGSVVLAMLMMRM 262
K F++C ++ +GSVV+ +L+M M
Sbjct: 286 KMRFSVCTIVSQGSVVIGLLLMAM 309
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 316 FKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQL 420
FK+K +E V L+ EN+ L +++K L+ QL
Sbjct: 1491 FKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQL 1525
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 316 FKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQL 420
FK+K +E V L+ EN+ L +++K L+ QL
Sbjct: 1491 FKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQL 1525
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 316 FKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQL 420
FK+K +E V L+ EN+ L +++K L+ QL
Sbjct: 1494 FKAKNAQEELAEVVEGLRRENKSLSQEIKDLTDQL 1528
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 319 KSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNK 495
+S T + +++ ++E Q+L EK+K L L+ L D K DT +L DL K
Sbjct: 1815 ESDSDTNKYQLQIASFESERQILTEKIKELDGALR-LSDSKVQDMKDDTDKLRR-DLTK 1871
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 319 KSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNK 495
+S T + +++ ++E Q+L EK+K L L+ L D K DT +L DL K
Sbjct: 1888 ESDSDTNKYQLQIASFESERQILTEKIKELDGALR-LSDSKVQDMKDDTDKLRR-DLTK 1944
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 319 KSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNK 495
+S T + +++ ++E Q+L EK+K L L+ L D K DT +L DL K
Sbjct: 1888 ESDSDTNKYQLQIASFESERQILTEKIKELDGALR-LSDSKVQDMKDDTDKLRR-DLTK 1944
>AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical
protein ZK993.2 protein.
Length = 903
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 295 EAVKKSRFKSKQRTQETFSRVSKLKAE 375
E +KKS +SK+ ++ SRV KLKAE
Sbjct: 682 EQLKKSYEESKKPRRDLISRVRKLKAE 708
>DQ231945-1|ABB69435.1| 51|Caenorhabditis elegans hypothetical
protein protein.
Length = 51
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 349 SRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKD 462
S + + E+ ++ K ++KQL FL+DL Q+ +D
Sbjct: 14 SNIIDHETESDLIRPLAKDVTKQLDFLRDLLKXQSLRD 51
>AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical
protein Y48G1C.11 protein.
Length = 414
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 375 EPSARGESKNFIKTTSVPERLVFCSSKERHHRI 473
+PS RG+ +N ++T +P L+F + HRI
Sbjct: 49 DPSRRGKPQNKMRTDVMPTWLLFLDCVSQLHRI 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,854,627
Number of Sequences: 27780
Number of extensions: 187491
Number of successful extensions: 719
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -