Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j06r
(756 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 5.4
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 5.4
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 5.4
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 5.4
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 5.4
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.4
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.4
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.4
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.4
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.4
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.4
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 21 9.4
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -3
Query: 247 NFWLFQTKLMLFTSTLQFIHIYYF 176
+F++F + +F + +QF ++YF
Sbjct: 277 DFFVFLSFAFIFATIIQFAVVHYF 300
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 85 LSNNYNYNNYNNNY 98
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 85 LSNNYNYNNYNNNY 98
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 85 LSNNYNYNNYNNNY 98
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 85 LSNNYNYNNYNNNY 98
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 318 LSNNYNYNNYNNNY 331
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 318 LSNNYNYNNYNNNY 331
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 318 LSNNYNYNNYNNNY 331
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 318 LSNNYNYNNYNNNY 331
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 318 LSNNYNYNNYNNNY 331
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 620 LMSNYNFNKYIHSY 579
L +NYN+N Y ++Y
Sbjct: 307 LSNNYNYNNYNNNY 320
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 499 TSYLPKLSPNKFQYYLWLP 443
T YL + P+ QY+ +LP
Sbjct: 317 TCYLSHVDPDVVQYFGYLP 335
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 499 TSYLPKLSPNKFQYYLWLP 443
T YL + P+ QY+ +LP
Sbjct: 23 TCYLSHVDPDVVQYFGYLP 41
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,297
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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