Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14j06f
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 33 0.044
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 29 0.72
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.3
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 27 2.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.2
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.1
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 6.7
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 8.8
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 25 8.8
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.8
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 8.8
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 8.8
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.8
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 32.7 bits (71), Expect = 0.044
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Frame = +2
Query: 197 WDFVVST---KDQLDFYVNNTKTTEHMNGRQPTVLDYDSVNDNILFVDV----YSNSTYS 355
WDF VS +YVN+ H N +P + D+D V D + ++ Y N +
Sbjct: 438 WDFSVSAIHRPKSAVYYVNH-----HSNNSKPAISDFDDVGDLTMGSEIDNSNYVNGDIT 492
Query: 356 YHLPTKQSTKLVNSNILTFDLAFDPAKRILF 448
H +S V S I +D+ P + F
Sbjct: 493 IHPTLSRSLIPVISPITIYDVDDSPLSSVFF 523
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.9 bits (64), Expect = 0.31
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 191 FSWDFV-VSTKDQLDFYVNNTKTTEHMNGRQPTVLDYDSVNDNILFVDVYSNSTYSYHLP 367
F DF V T D+ FY + K MN QP+ L + +ND ++F + YS + Y
Sbjct: 564 FRCDFENVRTMDR--FYQSFQKALS-MNKSQPSCLSFSKLNDFVVFFNNYSR--FEYEKE 618
Query: 368 TKQS 379
+K+S
Sbjct: 619 SKRS 622
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 344 STYSYHLPTKQSTKLVNSNILTFDLAFDPAKRILFWSEPQVKSIYWTS 487
ST YHL ++ LVN +++ +DL+ R+L ++S+ W+S
Sbjct: 33 STNGYHL----ASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSS 76
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 302 SVNDNILFVDVYSNSTYSYHLPTKQSTKLVNSNILTFDLAFDPAKRILFWSEPQV 466
S+ND ++F+ +NST+S S K++ I +D D K + WSE ++
Sbjct: 598 SINDVLVFMLEQTNSTFSSLNRKLYSDKIIVGQI--YDHIKDYNKALAIWSEVRI 650
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 323 FVDVYSNSTYSYHLPTKQSTKLV-NSNILTFDLAFDPAKRILFWSEPQ 463
F+ Y S YS++LP K + L NSN +D +K + ++ + Q
Sbjct: 191 FIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQ 238
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 296 SPRQWVVCRSCAL 258
+P WVVCR+CAL
Sbjct: 503 APPDWVVCRTCAL 515
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 197 WDFVVSTKDQLDFYVNNTKTTEHMNGRQPTVLDYD 301
W+ ++ ++ F +NTKTT + R P+ LD D
Sbjct: 370 WEMRLTNSARVYFVDHNTKTTTWDDPRLPSALDQD 404
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 323 FVDVYSNSTYSYHLPTKQSTKLVNSNILTFDLAF 424
F+D Y+NS+ H P+ L S++L D F
Sbjct: 51 FLDSYANSSSLLHKPSTNLGSLKTSSLLASDEVF 84
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 392 NSNILTFDLAFDPAKRILFW 451
N +ILTF LA D +LFW
Sbjct: 13 NKHILTFMLAADLIVNVLFW 32
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 206 VVSTKDQLDFYVNNTKTTEHMNGRQPTVLDYDSVNDNILF 325
V+ K L ++ TK EH+N PTV D S + F
Sbjct: 18 VLKMKKPLPLHMR-TKIREHLNKSDPTVKDDKSAKPELPF 56
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 583 IPSTAVHGERFGNFIFHFEQKISI 512
I ST GE+F N F E+KI I
Sbjct: 38 IESTLREGEQFANAFFDTEKKIQI 61
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = -2
Query: 407 LKCLS*PTLYF----ALLVNGNCTWNYYTR-LQIKYCHLRYRSPRQWVVCRSCALLFWCY 243
L C + P L F + L GN + + L+ H Y R W C + LFW Y
Sbjct: 51 LSCEAKPKLLFTPTKSSLSIGNFPYKEFDPVLKFPGIHYTYSRERLWGTCVILSTLFWSY 110
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 419 AFDPAKRILFWSEPQVKSIYWTSVK 493
A P +R F SEPQV ++ +SVK
Sbjct: 163 AISPHERESFPSEPQVSVLFTSSVK 187
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 592 PINIPSTAVHGERFG 548
PINIPST V FG
Sbjct: 125 PINIPSTEVESSNFG 139
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 404 LTFDLAFDPAKRILFWSEPQVKSIYWTSVKPG 499
L F L + P +L WS P Y V PG
Sbjct: 247 LPFSLDYRPFSPLLAWSSPLANVEYLALVYPG 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,488
Number of Sequences: 5004
Number of extensions: 63904
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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