Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14j06f
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.11 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 410 FDLAFDPAKRILFWSEPQVKSIYWTSVKPGSKSTNG 517
           F +A  P    L++S    +S+Y+ + KP  KS  G
Sbjct: 255 FGMALSPMTNNLYYSPLSSRSLYYVNTKPFMKSEYG 290


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 477 TGHPSSPARRVQMEIFCSKWK 539
           T  PS+  R+ Q E++  KW+
Sbjct: 407 TSKPSTMERQTQTEVWIPKWR 427


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 586 NIPSTAVHGER 554
           N P+T++HG+R
Sbjct: 475 NYPTTSIHGDR 485


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 220 GSVGFLCE*HQ 252
           G  GFLCE HQ
Sbjct: 291 GHSGFLCERHQ 301


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 605 DSYWSNKYTLYSCPRRALREFHFP 534
           ++Y+S K       R ALR++H P
Sbjct: 550 ENYYSGKLERTEEQRIALRKYHAP 573


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 605 DSYWSNKYTLYSCPRRALREFHFP 534
           ++Y+S K       R ALR++H P
Sbjct: 588 ENYYSGKLERTEEQRIALRKYHAP 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,838
Number of Sequences: 438
Number of extensions: 4699
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)