Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14i05f
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   1.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.3  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   4.0  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   9.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   9.3  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   9.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.3  

>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 34  ETKMPARKRISLEEEYSKPTGITAD-DIAKLRQWLDTQPHLPKNLTD 171
           E+  PAR  ISLE   S P G T + DIA+    +D+  H  +  T+
Sbjct: 80  ESPTPARTSISLESAIS-PNGTTNEQDIAQQGDMIDSHVHFGEQPTE 125


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 151 LPKNLTDLDLILIYHKCDRSIQV 219
           +PKNLT  D IL Y++ +R++ +
Sbjct: 579 MPKNLTLADKILFYNRANRTVAI 601


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 388  DTDVNKFDFASAIKGVFMMLDLWQYEEGTWPGLTFIF 498
            D D+N  D  S +K +   L++W+  +  W  L+ IF
Sbjct: 1513 DGDMNITDLQSKMKIIVKFLNIWKEIQQIWTHLSAIF 1549


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 205 RSIQVSKQEIDNQYTLRTLFTSFFKDRSLNKDI 303
           RS+ + K ++   YTL   F++FFK R L+  I
Sbjct: 386 RSVNL-KDQLKIDYTLEVCFSAFFKPRILSIQI 417


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 306 KFLPDRARHYPAESLQS-GRCDLLR 377
           K LPD A   P E ++S G+ +LLR
Sbjct: 173 KILPDEAAETPCEMIKSLGKSELLR 197


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
 Frame = +1

Query: 64  SLEEEYSKPTGITAD-------DIAKLRQWLDTQPHLPK 159
           S ++ Y KPTG T D       D +K + ++  +P +PK
Sbjct: 77  SYQQYYQKPTGNTVDEDKSRVPDFSKKKSFVPPKPAIPK 115


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 278 LKKDVNNVLRVY*LSISCLETWMLRSHL 195
           ++K ++ +  VY +   C ETW LR HL
Sbjct: 111 IQKSLHRLKEVYYIYRECAETWQLR-HL 137


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/69 (18%), Positives = 34/69 (49%)
 Frame = +1

Query: 103  ADDIAKLRQWLDTQPHLPKNLTDLDLILIYHKCDRSIQVSKQEIDNQYTLRTLFTSFFKD 282
            AD+IA+LR  L++     +   + +++    +     + +K+E++NQ   ++      ++
Sbjct: 1567 ADEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEE 1626

Query: 283  RSLNKDIEN 309
            ++     EN
Sbjct: 1627 QAQKNSSEN 1635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,374
Number of Sequences: 5004
Number of extensions: 53756
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)