Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14i05f
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0957 + 9531045-9531069,9531904-9531971,9532659-9532882,953... 32 0.34
08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414... 31 0.59
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 29 3.2
05_03_0105 - 8441106-8441327,8443355-8443462,8443606-8443671,844... 29 4.2
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 5.5
03_01_0569 + 4204326-4204443,4204539-4204948,4205062-4205203,420... 28 5.5
01_06_0111 + 26552513-26553361 28 5.5
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 27 9.7
03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925 27 9.7
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 27 9.7
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 27 9.7
>12_01_0957 +
9531045-9531069,9531904-9531971,9532659-9532882,
9533299-9533380,9533513-9533572,9533717-9533795,
9533935-9534082,9534237-9534312,9534603-9534776,
9535908-9536058,9536264-9536292,9536388-9536536,
9536652-9536754,9537043-9537098,9537209-9537332,
9537547-9537609,9537707-9537766,9537942-9538103,
9538262-9538332,9538500-9538593,9538675-9538811,
9538915-9538995,9539402-9539524,9539585-9539693
Length = 815
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 466 EGTWPGLTFIFDLQGIKMGLLSKLDIQNIQQFV-----AYFPDAILAKFNGLHFINT 621
EG++P LT + D+ MG L+I++ F+ +Y PD +L K+N HF+ T
Sbjct: 292 EGSFPALTLVDDVDR-NMG--KPLNIESTNHFLVTLNPSYVPDHVLLKWNTNHFVPT 345
>08_01_0470 -
4140669-4140728,4142004-4142270,4142526-4144557,
4144763-4145550
Length = 1048
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 487 TFIFDLQGIKMGLLSKLDIQNIQQFVAYFPDAILAKFNGLHFINTPTFMDRV 642
+ +FD+QG + ++ L+ V + DA L F L +N P+ + RV
Sbjct: 838 SILFDVQGSECAIMPSLESLAFSVHVRFLKDADLLCFKKLGLVNLPSSLQRV 889
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +1
Query: 232 IDNQYTLRTLFTSFFKDRSLNKDIENFFLTALVTILPNRSKAGDAIFYARILDTDVNKFD 411
+ N YT + + FK + D+ FF + R D + Y+ I+D V D
Sbjct: 525 VPNLYTYKVIINGLFKGNE-SDDLWGFFGDMI-----KRGYIPDVVLYSIIIDGFVKALD 578
Query: 412 FASAIKGVFMMLDLWQYEEGTWPGL 486
A + MLD EGT P +
Sbjct: 579 LQEAFRLYHKMLD-----EGTMPNI 598
>05_03_0105 -
8441106-8441327,8443355-8443462,8443606-8443671,
8443915-8443923
Length = 134
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 507 RNKNGLTVQIGHTEYTTVRSLF 572
R NG+ VQIGHT+Y V F
Sbjct: 109 RVTNGMAVQIGHTDYNGVAGSF 130
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 129 MVGHSTASAEEPYRSRSDPDLPQMRPQHPSLQTGDR 236
+ G +T + E ++ + + DLP+ P HP+L R
Sbjct: 242 VAGENTEVSSEKWKGQIEKDLPRTFPGHPALDEDGR 277
>03_01_0569 +
4204326-4204443,4204539-4204948,4205062-4205203,
4205312-4205337
Length = 231
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 561 RSLFP*CNISEIQWSALHKYAHVHGP 638
R P +SEI WS LHK H P
Sbjct: 166 RETMPEATVSEIIWSLLHKNTHPEKP 191
>01_06_0111 + 26552513-26553361
Length = 282
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 584 IASGK*ATNCCIFCMSNLDSKP 519
+ASG TNCC F +S S+P
Sbjct: 24 VASGSSTTNCCCFFLSRRTSEP 45
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 629 NVGVFMKCRPLNFANIASG 573
N+ VF +CRPL+ A I++G
Sbjct: 192 NIRVFCRCRPLSTAEISNG 210
>03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 576 REISYELLYILYVQFGQ*AHFYSLQIEDE--GQSW 478
REI+ +L+V FGQ YSL IE G SW
Sbjct: 12 REINLSKPPVLFVVFGQQTELYSLVIEQRIGGCSW 46
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 527 SKPIFIPCKSKMKVSPGHVPSSYCHRSSIIKT 432
SKP I + + KV+PGHV H + K+
Sbjct: 490 SKPPLIQQRGRFKVTPGHVELDKAHSPGLQKS 521
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 65 VWRKSIVSRLVSLQMILPSYANGWTLNRICRRTLP 169
+WR+S LV + +L + G T+NR C +TLP
Sbjct: 1179 IWRES--EALVFFEKLLSNLFIGSTVNRKCVKTLP 1211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,583
Number of Sequences: 37544
Number of extensions: 337215
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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