Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14h20f
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 75 6e-14
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 66 2e-11
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 55 4e-08
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 52 5e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 31 0.53
07_03_0083 - 13231110-13231517 30 1.6
09_06_0221 - 21649030-21649290,21649553-21649610,21649943-216502... 27 8.6
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 27 8.6
01_06_0040 - 25874308-25874611,25875743-25875822,25876764-258769... 27 8.6
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 27 8.6
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 74.5 bits (175), Expect = 6e-14
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Frame = +1
Query: 148 EGWVDVRLNHFNAANTATFPMRYYYNNEFASENIVIFVGGEWAISPGWVRSGLAYELAEA 327
E W+D RL+HF+ + F RYY ++ + +F+ S + + L++
Sbjct: 52 ERWMDQRLDHFSPTDHRQFKQRYYEFADYHAGGGPVFLRICGESSCNGIPNDYLAVLSKK 111
Query: 328 TRAGLFYTEHRYYGLTRPTEDTGLEFLRFLTVDQALADLAQFIQY---VKSDAFEAGQFR 498
A + EHRYYG + P E E LRFL+ QAL DL F Q+ + + +
Sbjct: 112 FGAAVVTPEHRYYGKSSPFESLTTENLRFLSSKQALFDLVAFRQHYQEILNARYNRSSGF 171
Query: 499 QAKVALVGCSYAGSMATWMRLAYPHL 576
+ G SY+G+++ W RL +PHL
Sbjct: 172 DNPWFVFGVSYSGALSAWFRLKFPHL 197
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 66.1 bits (154), Expect = 2e-11
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Frame = +1
Query: 184 AANTATFPMRYYYNNEF---ASENIVIFVGGEWAISPGWVRSGLAYELAEATRAGLFYTE 354
+A+ F RYY ++ I +++ GE + + G S LA +A+ A + E
Sbjct: 83 SADHRQFKQRYYEFLDYYRAPKGPIFLYICGESSCN-GIPNSYLAV-MAKKFGAAVVSPE 140
Query: 355 HRYYGLTRPTEDTGLEFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVA---LVGC 525
HRYYG + P E E LRFL+ QAL DLA F QY + + A R + + G
Sbjct: 141 HRYYGKSSPFESLTTENLRFLSSKQALFDLAVFRQYYQ-ETLNAKYNRSGADSSWFVFGG 199
Query: 526 SYAGSMATWMRLAYPHL 576
SYAG+++ W RL +PHL
Sbjct: 200 SYAGALSAWFRLKFPHL 216
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 352 EHRYYGLTRP--TEDTGL---EFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVAL 516
+HRYYG + P ++D + L +LT +QALAD A + +K + G + V L
Sbjct: 160 QHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYAVLLTDLKKNLSSEG----SPVVL 215
Query: 517 VGCSYAGSMATWMRLAYPHL 576
G SY G +A WMRL YPH+
Sbjct: 216 FGGSYGGMLAAWMRLKYPHI 235
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +1
Query: 352 EHRYYGLTRP---TEDTGLEFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVALVG 522
+HR+YG ++P ++ E L +LT QALAD A I +K + + V + G
Sbjct: 143 QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITSLKHNLSAVS----SPVVVFG 198
Query: 523 CSYAGSMATWMRLAYPHL-VDAVFS 594
SY G +A+W RL YPH+ + AV S
Sbjct: 199 GSYGGMLASWFRLKYPHVTIGAVAS 223
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 190 NTATFPMRYYYNNEFA-SENIVIFVGGE 270
N P+R++YN EFA S IV +VGG+
Sbjct: 151 NLEILPVRFHYNGEFANSRRIVQYVGGD 178
>07_03_0083 - 13231110-13231517
Length = 135
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 524 HPTKATFACLNCPASKASLLTYCMNCARSA 435
HP+ AT AC+ P+S+AS T R A
Sbjct: 75 HPSNATVACIGSPSSQASASTATSRLMRKA 104
>09_06_0221 -
21649030-21649290,21649553-21649610,21649943-21650292,
21650605-21650799
Length = 287
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 190 NTATFPMRYYYNNEFASENIVIFVGGEWAISPGWVRSGLAYELAEATRAGLF-YTEHRYY 366
N PM+Y N+ F+ NI++ G ++ GW Y + GL+ Y + +Y
Sbjct: 63 NMQVNPMKY--NSIFSGLNILVKEEGASSLWRGWAGKFFGYGFQGGCKFGLYEYFKKKYS 120
Query: 367 GLTRPTEDTGLEFLRFLTVDQALADLA 447
+ + + F+ + Q +AD+A
Sbjct: 121 DVLVDRNKSTIYFISSASA-QIIADVA 146
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 506 FACLNCPASKASLLTYCMNCAR 441
F C NC A L+ YC C R
Sbjct: 307 FFCYNCAAPMTKLVHYCKKCNR 328
>01_06_0040 -
25874308-25874611,25875743-25875822,25876764-25876996,
25877285-25877354
Length = 228
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 352 RCRRVQLSW-PPLVRKQDRTSPTPGRSPTHPRR 257
RC R+ + PP VR ++ SP HPRR
Sbjct: 191 RCERITAATGPPAVRPPPSSAAAAAPSPFHPRR 223
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 136 RVPIEGWVDVRLNHFNAANTATFPMRY---YYNNEFASE 243
R ++G D + NTA FP+RY YY++ AS+
Sbjct: 23 RTSLDGVRDKNVMQLKKLNTALFPVRYNEKYYHDTIASK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,454
Number of Sequences: 37544
Number of extensions: 344256
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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