Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14h14f
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.17
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 2.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 2.7
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 3.6
10_02_0061 - 4812903-4812940,4813140-4813536 28 3.6
04_03_0811 - 19909128-19912214 27 4.7
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 4.7
02_05_0210 - 26795630-26795757,26797987-26798617 27 4.7
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 27 6.2
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 27 6.2
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 27 8.2
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 27 8.2
07_03_0753 + 21251216-21251221,21251486-21251557,21251920-212522... 27 8.2
07_01_0857 - 7127681-7127830,7128896-7129414 27 8.2
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 27 8.2
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 8.2
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 27 8.2
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 308 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 183
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -1
Query: 174 VSGFLGASKTLGP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 19
+ G + A K L P GD + + V + G + H + + YCCED H Y G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167
Query: 18 SLE 10
SLE
Sbjct: 168 SLE 170
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 277 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 185
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 277 CGASLLTNTRSVTAAHC 327
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 65 WRWRPWSW---QKRPSNLTTTTRSVSPGPRVLDAPRKP 169
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 304 GCWSVRKLRRWKFCHSSVRSQVQQDGGEHQRWRQ 203
GCWS+R+L + HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 183 YQDCGWFCRQRWCSPPSCWTCDR 251
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
>02_05_0210 - 26795630-26795757,26797987-26798617
Length = 252
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 80 WSWQKRPSNLTTTTRSVSPGPRVLDA 157
W PS +T+ RS+SP PR+L A
Sbjct: 84 WVGDLHPSLVTSLLRSLSPSPRLLAA 109
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 295 SVRKLRRWKFCHSSVRS-QVQQDGGEHQRWRQNHPQSWYRRSQRLPRR 155
S RK+ RW + HS + + V GGE +W + Y Q RR
Sbjct: 336 SARKICRWLYNHSKLHAMMVSAIGGELVKWNATRFGTNYMFLQSFLRR 383
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 135 GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHG--YYQF--TGSLE 10
G + + V + G FCH + + YC ED H Y+F GSLE
Sbjct: 125 GHREWLAEVNYLGQFCHPNLVKLFGYCLEDEHRLLVYEFMPRGSLE 170
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 232 DGGEHQRWRQNHPQSWYRRSQRLPRRV 152
DGG Q WR ++ R QR P RV
Sbjct: 120 DGGSQQSWRSTGGENIGDREQRKPLRV 146
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 89 QKRPSNLTTTTRSVSPGPRVLDAPRKPLT 175
+++PS T T +V PGP V D RKPL+
Sbjct: 182 KEKPSIGTVT--AVGPGPLVEDGSRKPLS 208
>07_03_0753 +
21251216-21251221,21251486-21251557,21251920-21252253,
21252596-21252733,21252811-21253202
Length = 313
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 295 SVRKLRRWKFCHSSVRSQVQQD-GGEHQRW 209
S RK+ RW + HS + + V GGE +W
Sbjct: 67 SARKICRWLYNHSKLHAMVTTTIGGELVKW 96
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -3
Query: 214 RWRQNH--PQSWYRRSQRLPRR 155
RWR+ H PQ W RR R P R
Sbjct: 113 RWRRCHWRPQRWRRRRWRFPLR 134
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 249 DHKSSKMGVSTSVGGRTTHNPGTVEVS 169
+HK +G +SV RTTH G EV+
Sbjct: 128 EHKGDTLGSVSSVEERTTHAQGRKEVT 154
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 192 CGWFCRQRWCSPPSCWTCDR 251
C W C C P S W CD+
Sbjct: 334 CSW-CHYLTCVPTSSWKCDK 352
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 26.6 bits (56), Expect = 8.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +2
Query: 65 WRWRPWSWQKRPSNLTTTTRS 127
WRW+P W+K+ ++ + +S
Sbjct: 133 WRWQPLPWRKQTEDMLVSGKS 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,888
Number of Sequences: 37544
Number of extensions: 192803
Number of successful extensions: 801
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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