Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14h09f
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 276 LLA*IKAAFHQVPSESVPMP 335
           LLA I AAF  VP  +VP P
Sbjct: 10  LLATICAAFAYVPLPNVPQP 29


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 586 WTDDAWQDSTFAW 624
           W +  WQD  F W
Sbjct: 72  WLEHEWQDHKFQW 84


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 160 VKYTRRIHMRRARGIHMWGSRRISVQGWGKCPPTVVWMSCHFLTF 26
           +   R IH++       W +RRI+V G       VVW+    ++F
Sbjct: 119 ISLDRYIHIKDPLRYGRWVTRRIAVAG-----IAVVWLLAGLISF 158


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 574 PTVVESLTIGCDTKVHCTRGKFTVRGKLPSEES 476
           P  +E++ +G   ++H +        +LP+EES
Sbjct: 430 PRELEAVNLGSACRIHGSPATTAAPPQLPTEES 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,141
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)