Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14h08r
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           291   5e-81
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.20 

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  291 bits (714), Expect = 5e-81
 Identities = 130/238 (54%), Positives = 164/238 (68%)
 Frame = -3

Query: 788 SRNXYTPLAAXTEFRFGLELSQAFQRRNQLRWLVNWGPQWGLLASGDALTFIDNHDNQRG 609
           S+  Y  + A  EF++  E+S AF+  N L+WLVNWG QWG L S D+L F+DNHD QR 
Sbjct: 254 SKREYNGIGAVIEFKYSYEISNAFRGNNNLKWLVNWGEQWGFLPSKDSLVFVDNHDTQRD 313

Query: 608 HGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSFAFTDTEAGPPMNSRGDITSPTIN 429
           +     ILTYK S++YK A+AFML+HP+G P++MSSF F   + GPP +  G+I SP+I+
Sbjct: 314 NP---QILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFDFQSKDQGPPNDGNGNILSPSIH 370

Query: 428 ADNSCGNGWICEHRWRQIHNMVVFRNTAGNGALTNWWDNGSNQIAFCRGNQAFIAFNNDA 249
            DN C NGWICEHRWRQI+NMV FRN      + NWWDNGSNQIAF RG   F+AFN D 
Sbjct: 371 -DNICSNGWICEHRWRQIYNMVRFRNLVKGTKIDNWWDNGSNQIAFSRGCSGFVAFNGDQ 429

Query: 248 WDMDQTLQTCLPAGTYCDIISGARSGNRCTGKSIVVGSDGRARIIHRSNEYDMMVAIH 75
           +D+ + L+ CLP G YCD+ISG     RCTGK + VGSDG A I   + E D ++AIH
Sbjct: 430 YDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANIEIGAGEEDGVLAIH 487


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 630 QPRQPERSWRWWKHLDIQAIPTIQGRYRF---HVGTSLWLPSI 511
           QP+QP + +  WK +      T+Q R      H+  + W+PSI
Sbjct: 438 QPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSI 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,543
Number of Sequences: 438
Number of extensions: 5528
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)