Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14h04r
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 362 RHATIVHEWMHILGFLHMQSTHNRDDYVKIVKE 264
           RH  +   +  I+GF  + ST++  + VKI+ E
Sbjct: 268 RHENVSILYADIVGFTAISSTYSASELVKILNE 300


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 500 YREAGDTAFVRLTGGAGGCYAHVGYWESRGVHVLNLARNE 381
           +R       +RL G   G  +    W+   + +LNLARN+
Sbjct: 474 FRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNK 513



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 703 SPWNCRC 723
           +PW+CRC
Sbjct: 924 NPWSCRC 930


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 571 VLVSKPPSRRGSETSKNTHASSSVTARLETQPL-SDSPAELVD 446
           +L S+P      E SKN H  +  T +L    + SD+  E+ D
Sbjct: 48  LLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVND 90


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 707 GDIVLDDFMIEIL 669
           GD+ +DDF++E+L
Sbjct: 409 GDVPIDDFLVEML 421


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 586 ERGNLVLVSKPPSRRGSETSKNTHASSSVTARLETQPLSDS 464
           E+  + L+  PP R+ S+ S  +  S   +  +E QP+  S
Sbjct: 408 EKTKIDLLEIPPIRKISDCSTTSSLSGDESDVVELQPVKSS 448


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 707 GDIVLDDFMIEIL 669
           GD+ +DDF++E+L
Sbjct: 409 GDVPIDDFLVEML 421


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 490 LETQPLSDSPAELVDVMPTSVT 425
           L T   S SP EL   +PTS+T
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLT 388


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 495 RGWRHSLCQTHRRSWW 448
           RG+   +CQ     WW
Sbjct: 352 RGFLQPVCQNEMNKWW 367


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 59  EASHRRLHTNADPSHPRAPAEQR 127
           + SH  LH N+ PS  ++  +Q+
Sbjct: 807 QQSHHGLHINSSPSSVQSGQQQQ 829


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,844
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)