Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14h04f
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 418 YREAGDTAFVRLTGGAGGCYAHVGYWESRGVHVLNLARNE 537
           +R       +RL G   G  +    W+   + +LNLARN+
Sbjct: 474 FRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNK 513


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 202 KFQGDIVLDDFMIEIL 249
           K  GD+ +DDF++E+L
Sbjct: 406 KMIGDVPIDDFLVEML 421


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 347 VLVSKPPSRRGSETSKNTHASSSVTARLETQPL-SDSPAELVD 472
           +L S+P      E SKN H  +  T +L    + SD+  E+ D
Sbjct: 48  LLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVND 90


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 202 KFQGDIVLDDFMIEIL 249
           K  GD+ +DDF++E+L
Sbjct: 406 KMIGDVPIDDFLVEML 421


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/47 (19%), Positives = 25/47 (53%)
 Frame = +1

Query: 73  VVRTREEIQAFRSFLESIKSGDGSQFAARTMTNPLANPEENSGKFQG 213
           +V  ++++QA R++  ++ +    Q+    + NP+   ++ +   QG
Sbjct: 704 LVNAQQQVQAVRNYYANLYTKYHGQYPNTQIQNPVGQGQDMTYSVQG 750


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 332 ERGNLVLVSKPPSRRGSETSKNTHASSSVTARLETQPLSDS 454
           E+  + L+  PP R+ S+ S  +  S   +  +E QP+  S
Sbjct: 408 EKTKIDLLEIPPIRKISDCSTTSSLSGDESDVVELQPVKSS 448


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 428 LETQPLSDSPAELVDVMPTSVT 493
           L T   S SP EL   +PTS+T
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLT 388


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = +3

Query: 423 RGWRHSLCQTHRRSWW 470
           RG+   +CQ     WW
Sbjct: 352 RGFLQPVCQNEMNKWW 367


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 96  TGFQKLPGKHQIRRWESVRRENHDQSSGQP 185
           T  Q+L  + QIRR E    + HD+++ +P
Sbjct: 165 TTVQQLLRRAQIRRNERRTPDPHDETAKKP 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,568
Number of Sequences: 438
Number of extensions: 5122
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)